RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJEB6055" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 7 ✖

bioproject 1

  • PRJEB6055 · 7 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2675615 2675615 PRJEB6055_S_NODE_2363_length_207_cov_2.331395_g2339_i0 PRJEB6055 2363 207 2.331395 4.82598765 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 316 5.819999999999998e-82   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g2339 i0 94.203 45 207 12 100 0 1 207 2339 2545 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 9315 316 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
5228084 5228084 PRJEB6055_S_NODE_1625_length_232_cov_16626.888325_g1601_i0 PRJEB6055 1625 232 16626.888325 38574.380914 Cochliopodium minus 313997 Discosea other_Eukaryota 287 5.22e-73   NTclustered gi|330902862|gb|JF298257.1| 313997 g1601 i0 98.171 25.801724137931 164 3 71 0 3 166 7 170 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 5986 287 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
7778032 7778032 PRJEB6055_S_NODE_227_length_416_cov_5.225722_g205_i0 PRJEB6055 227 416 5.225722 21.73900352 Protostelium mycophagum 472931 Evosea other_Eukaryota 84.2 1.42e-11   NTclustered gi|262262904|gb|FJ766447.1| 472931 g205 i0 77.124 16.6754807692308 153 29 36 4 267 416 1298 1149 Protostelium mycophagum strain HI06-7A-1 small subunit ribosomal RNA gene, partial sequence blastn 6937 84.2 1 Eukaryota Amoebozoa   Evosea Variosea Protosteliida Protosteliaceae Protostelium Protostelium mycophagum
7778042 7778042 PRJEB6055_S_NODE_4527_length_166_cov_6.717557_g4503_i0 PRJEB6055 4527 166 6.717557 11.15114462 Heterostelium album 2086695 Evosea other_Eukaryota 163 6.16e-36   NTclustered gi|1160565032|ref|XM_020583308.1| 670386 g4503 i0 84.337 96.6204819277108 166 26 100 0 1 166 1032 867 Polysphondylium pallidum PN500 actin (act10), partial mRNA blastn 16039 163 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
7778048 7778048 PRJEB6055_S_NODE_7_length_1135_cov_12.217273_g4_i0 PRJEB6055 7 1135 12.217273 138.66604855 Paravannella minima 1443144 Discosea other_Eukaryota 111 1.88e-19   NTclustered gi|1583105587|ref|NC_040955.1| 1443144 g4 i0 75.862 10.0643171806167 232 48 20 8 1 228 3750 3523 Paravannella minima mitochondrion, complete genome blastn 11423 111 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Paravannella Paravannella minima
16702233 16702233 PRJEB6055_S_NODE_4794_length_163_cov_1.562500_g4770_i0 PRJEB6055 4794 163 1.5625 2.546875 Cochliopodium actinophorum 703021 Discosea other_Eukaryota 296 5.68e-76   NTclustered gi|330902844|gb|JF298248.1| 703021 g4770 i0 99.39 94.6257668711656 164 0 100 1 1 163 284 447 Cochliopodium actinophorum clone 1206 18S ribosomal RNA gene, partial sequence blastn 15424 296 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium actinophorum
20526476 20526476 PRJEB6055_S_NODE_137_length_478_cov_10.580135_g115_i0 PRJEB6055 137 478 10.580135 50.5730453 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 525 2.2799999999999993e-144   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g115 i0 88.383 34.4246861924686 439 48 91 3 42 478 2913 2476 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 16455 525 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;