RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

16 rows where bioproject = "PRJEB6054" and tax_phylum = "Rotifera"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Rotifera · 16 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB6054 · 16 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25523107 25523107 PRJEB6054_S_NODE_3313_length_256_cov_56809.135747_g3224_i0 PRJEB6054 3313 256 56809.135747 145431.38751232 Philodina roseola 96448 Rotifera other_Eukaryota 254 5.94e-63   NTclustered gi|183178949|gb|EU432548.1| 96448 g3224 i0 90.576 23.5859375 191 18 75 0 66 256 39932 39742 Philodina roseola guanylyl cyclase gene, complete sequence; and TAR-protein (TAR_2), U1-like Zn-finger-containing protein (U1Zn_2), unknown (PruORF0001_2), unknown (PrPCG0001_2), methione sulfide reductase B (MSRB_2), Strabismus, serine-threonin kinase copy 2, plasma membrane calcium-dependent ATPase (CAse_2), myosin essential light chain (MELC_2), 82 kDa heat shock protein (hsp82_4), FBox-LRR protein (FBoxLRR_2), TPRA_2 (TPRA_2), phosphoribosylaminoimidazole carboxylase (PAICS_2), and unknown (PruORF0002_2) genes, complete cds blastn 6038 254 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina roseola
25659050 25659050 PRJEB6054_S_NODE_4802_length_227_cov_65905.687500_g4713_i0 PRJEB6054 4802 227 65905.6875 149605.910625 Adineta vaga 104782 Rotifera other_Eukaryota 246 8.639999999999999e-61   NTclustered gi|194500447|gb|EU850438.1| 104782 g4713 i0 93.452 21.784140969163 168 8 73 2 63 227 26051 26218 Adineta vaga hypothetical protein 18 gene, partial cds; hypothetical protein 19, coatomer, GPCR, beta-transducin repeat, speckle-type POZ, adenosine kinase, prefoldin subunit, translation initiation factor eIF-4E, rho GTPase activating protein, histone H4, histone H3, histone H2B, and histone H2Av genes, complete cds; and mitochondrial ribosomal protein s22 gene, partial cds blastn 4945 246 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
25659153 25659153 PRJEB6054_S_NODE_7474_length_194_cov_2.264151_g7385_i0 PRJEB6054 7474 194 2.264151 4.39245294 Rotaria rotatoria 231624 Rotifera other_Eukaryota 348 1.91e-91   NTclustered gi|109892410|gb|DQ656785.1| 231624 g7385 i0 98.969 84.5721649484536 194 2 100 0 1 194 11 204 Rotaria rotatoria isolate TH 28S ribosomal RNA gene, partial sequence blastn 16407 348 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria rotatoria
25931114 25931114 PRJEB6054_S_NODE_10996_length_171_cov_1.088235_g10907_i0 PRJEB6054 10996 171 1.088235 1.86088185 Adineta ricciae 249248 Rotifera other_Eukaryota 257 2.83e-64   NTclustered gi|37675448|gb|AY394701.1| 249248 g10907 i0 94.083 8.11695906432749 169 10 99 0 1 169 479 647 Adineta ricciae 82kD heat-shock protein gene (hsp82), partial sequence blastn 1388 257 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta ricciae
25931299 25931299 PRJEB6054_S_NODE_3676_length_246_cov_1.473934_g3587_i0 PRJEB6054 3676 246 1.473934 3.62587764 Adineta ricciae 249248 Rotifera other_Eukaryota 59.3 4.95e-9   NR CAF0747866.1 249248 g3587 i0 98.6 0.890243902439024 73 1 89 0 1 219 46 118 CAF0747866.1 unnamed protein product [Adineta ricciae] diamond 219 59.3 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta ricciae
26023966 26023966 PRJEB6054_S_NODE_9996_length_177_cov_2.267606_g9907_i0 PRJEB6054 9996 177 2.267606 4.01366262 Ploima 84394 Rotifera other_Eukaryota 156 1.11e-33   NTclustered gi|1859640894|gb|MN970216.1| 360698 g9907 i0 91.304 11.0395480225989 115 8 64 2 50 162 12518 12404 Proales similis mitochondrion, complete genome blastn 1954 156 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Proalidae Proales Proales similis
26203527 26203527 PRJEB6054_S_NODE_15654_length_151_cov_2.043103_g15565_i0 PRJEB6054 15654 151 2.043103 3.08508553 Adineta ricciae 249248 Rotifera other_Eukaryota 88.6 5.81e-19   NR CAF1678654.1 249248 g15565 i0 98 0.973509933774834 49 1 97.4 0 149 3 396 444 CAF1678654.1 unnamed protein product, partial [Adineta ricciae] diamond 147 88.6 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta ricciae
26295804 26295804 PRJEB6054_S_NODE_14422_length_155_cov_2.816667_g14333_i0 PRJEB6054 14422 155 2.816667 4.36583385 root 1 Root_unresolved Root_unresolved 287 3.21e-73   NTclustered gi|1399047|gb|U41281.1|PAU41281 44582 g14333 i0 100 100 155 0 100 0 1 155 953 1107 Philodina acuticornis 18S rRNA gene blastn 15500 287 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina acuticornis
26339498 26339498 PRJEB6054_S_NODE_559_length_445_cov_30783.668293_g479_i0 PRJEB6054 559 445 30783.668293 136987.32390385 Philodina citrina 468664 Rotifera other_Eukaryota 411 6.17e-110   NTclustered gi|407227484|emb|FR856884.1| 468664 g479 i0 88.102 12.7011235955056 353 33 78 7 97 445 2393 2046 Philodina citrina complete mitochondrial genome blastn 5652 411 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina citrina
26475697 26475697 PRJEB6054_S_NODE_3208_length_259_cov_56403.071429_g3119_i0 PRJEB6054 3208 259 56403.071429 146083.95500111 Adineta vaga 104782 Rotifera other_Eukaryota 213 1.02e-50   NTclustered gi|259129963|gb|GQ398061.1| 104782 g3119 i0 87.368 18.3706563706564 190 19 72 3 74 259 6540 6352 Adineta vaga 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 4758 213 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
32928885 32928885 PRJEB6054_S_NODE_2505_length_283_cov_2.911290_g2416_i0 PRJEB6054 2505 283 2.91129 8.2389507 Adineta ricciae 249248 Rotifera other_Eukaryota 49.7 2.12e-4   NR CAF1014340.1 249248 g2416 i0 74.3 0.371024734982332 35 6 33.9 1 282 187 208 242 CAF1014340.1 unnamed protein product [Adineta ricciae] diamond 105 49.7 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta ricciae
33031391 33031391 PRJEB6054_S_NODE_7044_length_198_cov_0.981595_g6955_i0 PRJEB6054 7044 198 0.981595 1.9435581 Brachionus plicatilis 10195 Rotifera other_Eukaryota 105 2.49e-25   NR RNA36125.1 10195 g6955 i0 82 0.924242424242424 61 10 90.9 1 198 19 255 315 RNA36125.1 guanine nucleotide-binding subunit beta-2-like 1 [Brachionus plicatilis] diamond 183 105 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus plicatilis
33031407 33031407 PRJEB6054_S_NODE_9860_length_178_cov_1.958042_g9771_i0 PRJEB6054 9860 178 1.958042 3.48531476 Adineta ricciae 249248 Rotifera other_Eukaryota 61.6 3.75e-10   NR CAF0730632.1 249248 g9771 i0 96.7 1.01123595505618 30 1 50.6 0 178 89 107 136 CAF0730632.1 unnamed protein product [Adineta ricciae] diamond 180 61.6 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta ricciae
33042602 33042602 PRJEB6054_S_NODE_5668_length_215_cov_1.655556_g5579_i0 PRJEB6054 5668 215 1.655556 3.5594454 Adineta 104781 Rotifera other_Eukaryota 93.2 1.43e-22   NR CAF0980491.1 249248 g5579 i0 95.7 1.93953488372093 47 2 65.6 0 213 73 26 72 CAF0980491.1 unnamed protein product [Adineta ricciae] diamond 417 93.6 0.995726495726496 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta ricciae
33082438 33082438 PRJEB6054_S_NODE_10966_length_171_cov_1.757353_g10877_i0 PRJEB6054 10966 171 1.757353 3.00507363 Adineta ricciae 249248 Rotifera other_Eukaryota 55.8 3.29e-7   NR CAF1526813.1 249248 g10877 i0 92.6 0.473684210526316 27 2 47.4 0 3 83 615 641 CAF1526813.1 unnamed protein product [Adineta ricciae] diamond 81 55.8 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta ricciae
33150695 33150695 PRJEB6054_S_NODE_13824_length_157_cov_1.639344_g13735_i0 PRJEB6054 13824 157 1.639344 2.57377008 Adineta vaga 104782 Rotifera other_Eukaryota 50.4 1.59e-5   NR UJR14360.1 104782 g13735 i0 90.9 0.420382165605096 22 2 42 0 3 68 204 225 UJR14360.1 hypothetical protein I4U23_001356 [Adineta vaga] diamond 66 50.4 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;