RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJEB6054" and tax_phylum = "Platyhelminthes"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB6054 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26160054 26160054 PRJEB6054_S_NODE_1941_length_308_cov_13.644689_g1852_i0 PRJEB6054 1941 308 13.644689 42.02564212 Dalyellia 1311978 Platyhelminthes Platyhelminthes 117 1.0100000000000002e-21   NTclustered gi|472441160|gb|KC529574.1| 1311979 g1852 i0 91.667 27.2954545454545 84 7 27 0 222 305 1410 1493 Dalyellia tatrica isolate UH252.7 28S ribosomal RNA gene, partial sequence blastn 8407 117 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Rhabdocoela Dalyelliidae Dalyellia Dalyellia tatrica
32911626 32911626 PRJEB6054_S_NODE_10977_length_171_cov_1.470588_g10888_i0 PRJEB6054 10977 171 1.470588 2.51470548 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 59.3 1.65e-9   NR CAX78304.1 6182 g10888 i0 65 1.40350877192982 40 14 70.2 0 169 50 60 99 CAX78304.1 Ribosomal Protein, Small subunit [Schistosoma japonicum] diamond 240 59.3 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;