RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

1 row where bioproject = "PRJEB6054" and tax_phylum = "Endomyxa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 1 ✖

tax_clade 1

bioproject 1

  • PRJEB6054 · 1 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
33082488 33082488 PRJEB6054_S_NODE_3918_length_240_cov_3.907317_g3829_i0 PRJEB6054 3918 240 3.907317 9.3775608 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 68.9 1.93e-11   NR CEO98802.1 37360 g3829 i0 68.5 0.675 54 16 66.3 1 240 82 288 341 CEO98802.1 hypothetical protein PBRA_006916 [Plasmodiophora brassicae] diamond 162 68.9 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;