RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB6054" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB6054 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26023885 26023885 PRJEB6054_S_NODE_3540_length_250_cov_1.981395_g3451_i0 PRJEB6054 3540 250 1.981395 4.9534875 Metazoa 33208 Echinodermata other_Eukaryota 98.6 5.649999999999999e-23   NR XP_033125693.1 1529436 g3451 i0 63.6 1.572 66 24 79.2 0 249 52 194 259 XP_033125693.1 40S ribosomal protein S4, X isoform-like [Anneissia japonica] diamond 393 99 0.995959595959596 Eukaryota Opisthokonta Metazoa Echinodermata Crinoidea Comatulida Comatulidae Anneissia Anneissia japonica
26067300 26067300 PRJEB6054_S_NODE_3485_length_251_cov_533.407407_g3396_i0 PRJEB6054 3485 251 533.407407 1338.85259157 Opisthokonta 33154 Echinodermata other_Eukaryota 95.9 4.929999999999999e-23   NR XP_030835317.1 7668 g3396 i0 78.2 21.0956175298805 55 12 65.7 0 3 167 92 146 XP_030835317.1 LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 D2 [Strongylocentrotus purpuratus] diamond 5295 95.9 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;