RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB6054" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB6054 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
33127911 33127911 PRJEB6054_S_NODE_5159_length_222_cov_3.791444_g5070_i0 PRJEB6054 5159 222 3.791444 8.41700568 Pseudomonadati 3379134 Bacteria Bacteria 95.9 1.74e-23   NR WP_303680833.1 1100 g5070 i0 88.7 3.64864864864865 53 6 71.6 0 195 37 1 53 WP_303680833.1 MarR family EPS-associated transcriptional regulator [Pelodictyon luteolum] diamond 810 95.9 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Pelodictyon Pelodictyon luteolum
33167703 33167703 PRJEB6054_S_NODE_4208_length_234_cov_4.844221_g4119_i0 PRJEB6054 4208 234 4.844221 11.33547714 Pelodictyon luteolum 1100 Bacteria Bacteria 108 1.4e-28   NR WP_303680833.1 1100 g4119 i0 85.5 0.884615384615385 69 10 88.5 0 234 28 55 123 WP_303680833.1 MarR family EPS-associated transcriptional regulator [Pelodictyon luteolum] diamond 207 108 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Pelodictyon Pelodictyon luteolum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;