RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB6054" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJEB6054 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25615609 25615609 PRJEB6054_S_NODE_5425_length_218_cov_133.240437_g5336_i0 PRJEB6054 5425 218 133.24043699999999 290.46415266 root 1 Root_unresolved Root_unresolved 63.9 8.9e-6   NTclustered gi|2222034613|gb|CP094108.1| 210 g5336 i0 100 16.0550458715596 34 0 16 0 178 211 685184 685151 Helicobacter pylori strain Hpfe073 chromosome, complete genome blastn 3500 63.9 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
25751891 25751891 PRJEB6054_S_NODE_5498_length_217_cov_33.615385_g5409_i0 PRJEB6054 5498 217 33.615385 72.94538545 root 1 Root_unresolved Root_unresolved 63.9 8.85e-6   NTclustered gi|2222034613|gb|CP094108.1| 210 g5409 i0 100 16.1152073732719 34 0 16 0 177 210 685184 685151 Helicobacter pylori strain Hpfe073 chromosome, complete genome blastn 3497 63.9 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;