RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJEB6054", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJEB6054 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32928854 32928854 PRJEB6054_S_NODE_113_length_676_cov_4.269891_g102_i0 PRJEB6054 113 676 4.269891 28.86446316 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 46.2 0.0027   NR MDY6904056.1 2202153 g102 i0 67.9 0.124260355029586 28 9 12.4 0 120 203 28 55 MDY6904056.1 hypothetical protein [Thermodesulfobacteriota bacterium] diamond 84 46.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
32963227 32963227 PRJEB6054_S_NODE_754_length_409_cov_2.548128_g668_i0 PRJEB6054 754 409 2.548128 10.42184352 Smithellaceae bacterium 2964540 Bacteria Bacteria 50.1 5.35e-5   NR HOC61279.1 2964540 g668 i0 32.8 0.469437652811736 64 42 46.2 1 345 157 10 73 HOC61279.1 hypothetical protein [Smithellaceae bacterium] diamond 192 50.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Smithellaceae   Smithellaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;