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contig_metadata

6 rows where bioproject = "PRJEB6054", tax_kingdom = "Metazoa" and tax_phylum = "Chordata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chordata · 6 ✖

tax_kingdom 1

  • Metazoa · 6 ✖

tax_clade 1

bioproject 1

  • PRJEB6054 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26067162 26067162 PRJEB6054_S_NODE_12213_length_164_cov_1.697674_g12124_i0 PRJEB6054 12213 164 1.697674 2.78418536 Mus musculus 10090 Chordata Chordata 54.7 0.004   NTclustered gi|71533340|gb|AC156162.2| 10090 g12124 i0 100 0.176829268292683 29 0 18 0 28 56 100755 100783 Mus musculus BAC clone RP24-342A17 from chromosome 9, complete sequence blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
26203473 26203473 PRJEB6054_S_NODE_12702_length_162_cov_19.755906_g12613_i0 PRJEB6054 12702 162 19.755906 32.00456772 Mus musculus 10090 Chordata Chordata 54.7 0.004   NTclustered gi|57544729|gb|AC116825.23| 10090 g12613 i0 96.97 1.41358024691358 33 0 20 1 131 162 25802 25770 Mus musculus chromosome 8, clone RP24-367H14, complete sequence blastn 229 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
26203562 26203562 PRJEB6054_S_NODE_2070_length_302_cov_7.730337_g1981_i0 PRJEB6054 2070 302 7.730337 23.34561774 Cairina moschata 8855 Chordata Chordata 52.8 0.028   NTclustered gi|2921975556|gb|CP130394.1| 8855 g1981 i0 100 0.0927152317880795 28 0 9 0 50 77 1455432 1455405 Cairina moschata breed yongchun chromosome 17 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Cairina Cairina moschata
26295793 26295793 PRJEB6054_S_NODE_12246_length_164_cov_0.930233_g12157_i0 PRJEB6054 12246 164 0.930233 1.52558212 Mus 10088 Chordata Chordata 303 3.42e-78   NTclustered gi|756142290|gb|KP260515.1| 10090 g12157 i0 100 100.30487804878 164 0 100 0 1 164 1257 1094 Mus musculus strain ME mitochondrion, complete genome blastn 16450 303 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
26339349 26339349 PRJEB6054_S_NODE_2127_length_299_cov_37.416667_g2038_i0 PRJEB6054 2127 299 37.416667 111.87583433 Leopardus geoffroyi 46844 Chordata Chordata 56.5 0.002   NTclustered gi|2166791660|ref|XR_006704252.1| 46844 g2038 i0 100 0.100334448160535 30 0 10 0 270 299 85 114 PREDICTED: Leopardus geoffroyi uncharacterized LOC123582161 (LOC123582161), ncRNA blastn 30 56.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Felidae Leopardus Leopardus geoffroyi
33167657 33167657 PRJEB6054_S_NODE_10576_length_173_cov_3.775362_g10487_i0 PRJEB6054 10576 173 3.775362 6.53137626 Eptesicus fuscus 29078 Chordata Chordata 42.7 0.0141   NR XP_054580937.1 29078 g10487 i0 49 2.56647398843931 49 17 71.1 3 173 51 215 263 XP_054580937.1 60S ribosomal protein L11-like [Eptesicus fuscus] diamond 444 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Vespertilionidae Eptesicus Eptesicus fuscus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;