RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB6054", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB6054 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25931172 25931172 PRJEB6054_S_NODE_15132_length_153_cov_1.694915_g15043_i0 PRJEB6054 15132 153 1.694915 2.59321995 Phaeodactylum tricornutum CCAP 1 2850 SAR_Eukaryotes SAR_Eukaryotes 111 2.04e-20   NTclustered gi|219123891|ref|XM_002182214.1| 556484 g15043 i0 85.714 1.37254901960784 105 15 69 0 29 133 321 425 Phaeodactylum tricornutum CCAP 1055/1 ubiquitin extension protein 1/2 (UBI1/2), mRNA blastn 210 111 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
26339238 26339238 PRJEB6054_S_NODE_111_length_685_cov_24.581538_g100_i0 PRJEB6054 111 685 24.581538 168.3835353 Guinardia delicatula 1244696 SAR_Eukaryotes SAR_Eukaryotes 235 6.32e-57   NTclustered gi|2074156200|gb|MW413905.1| 216802 g100 i0 78.534 63.6846715328467 382 64 54 15 180 551 24229 24602 Guinardia delicatula mitochondrion, complete genome blastn 43624 235 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Rhizosoleniales Rhizosoleniaceae Guinardia Guinardia delicatula

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;