RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB6054", tax_clade = "PVC group" and tax_phylum = "Planctomycetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJEB6054 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26203516 26203516 PRJEB6054_S_NODE_15094_length_153_cov_3.042373_g15005_i0 PRJEB6054 15094 153 3.042373 4.65483069 Roseimaritima ulvae 980254 Bacteria Bacteria 174 2.56e-39   NTclustered gi|1727550343|gb|CP042914.1| 980254 g15005 i0 91.406 6.90196078431373 128 10 84 1 24 151 6157558 6157432 Roseimaritima ulvae strain UC8 chromosome, complete genome blastn 1056 174 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Roseimaritima Roseimaritima ulvae
33042595 33042595 PRJEB6054_S_NODE_12724_length_162_cov_3.755906_g12635_i0 PRJEB6054 12724 162 3.755906 6.08456772 Pseudomonadati 3379134 Bacteria Bacteria 41.6 0.0145   NR HNU27156.1 2026780 g12635 i0 40 3.61111111111111 50 23 92.6 1 154 5 60 102 HNU27156.1 hypothetical protein [Planctomycetota bacterium] diamond 585 42 0.990476190476191 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
33167663 33167663 PRJEB6054_S_NODE_11448_length_168_cov_1.796992_g11359_i0 PRJEB6054 11448 168 1.796992 3.01894656 Planctomycetaceae bacterium 2026779 Bacteria Bacteria 88.2 8.82e-19   NR MAT70362.1 2026779 g11359 i0 80.4 1 56 11 100 0 1 168 124 179 MAT70362.1 hypothetical protein [Planctomycetaceae bacterium] diamond 168 88.2 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   Planctomycetaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;