RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB6054", tax_clade = "Opisthokonta" and tax_phylum = "Basidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Basidiomycota · 4 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 4 ✖

bioproject 1

  • PRJEB6054 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26067159 26067159 PRJEB6054_S_NODE_12189_length_164_cov_2.480620_g12100_i0 PRJEB6054 12189 164 2.48062 4.0682168 Malassezia restricta 76775 Fungi Fungi 303 3.42e-78   NTclustered gi|1546635598|ref|XR_003525370.1| 76775 g12100 i0 100 63.3414634146341 164 0 100 0 1 164 3192 3355 Malassezia restricta 28S ribosomal RNA (MRET_r0004), rRNA blastn 10388 303 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia restricta
26067233 26067233 PRJEB6054_S_NODE_1965_length_307_cov_4.602941_g1876_i0 PRJEB6054 1965 307 4.602941 14.13102887 Malassezia restricta 76775 Fungi Fungi 529 1.0899999999999996e-145   NTclustered gi|1042812810|gb|KT351778.1| 76775 g1876 i0 97.72 99.557003257329 307 7 100 0 1 307 4 310 Malassezia restricta isolate contig100_19323 26S ribosomal RNA gene, partial sequence blastn 30564 529 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia restricta
26067455 26067455 PRJEB6054_S_NODE_7797_length_191_cov_1.993590_g7708_i0 PRJEB6054 7797 191 1.99359 3.8077569000000002 Phaffia sp. 2305856 Fungi Fungi 119 1.6000000000000002e-22   NTclustered gi|1796169992|gb|MN014091.1| 2305856 g7708 i0 81.69 21.8952879581152 142 26 74 0 50 191 1572 1431 Phaffia sp. strain GPS23.2A4 translation elongation factor 1-alpha (tef1) gene, partial cds blastn 4182 119 1 Eukaryota Opisthokonta Fungi Basidiomycota Tremellomycetes Cystofilobasidiales Mrakiaceae Phaffia Phaffia sp.
26431752 26431752 PRJEB6054_S_NODE_2399_length_287_cov_1454.250000_g2310_i0 PRJEB6054 2399 287 1454.25 4173.6975 Agaricomycetes 155619 Fungi Fungi 117 9.28e-22   NTclustered gi|2723225103|dbj|LC813565.1| 5353 g2310 i0 83.333 44.4947735191638 126 21 44 0 130 255 759 634 Lentinula edodes BCRC:MU30948 DNA, clone Type1 blastn 12770 117 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Agaricales Omphalotaceae Lentinula Lentinula edodes

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;