RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

11 rows where bioproject = "PRJEB6054", tax_clade = "Opisthokonta" and tax_phylum = "Ascomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ascomycota · 11 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 11 ✖

bioproject 1

  • PRJEB6054 · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25523221 25523221 PRJEB6054_S_NODE_6265_length_207_cov_1.430233_g6176_i0 PRJEB6054 6265 207 1.430233 2.96058231 Candida orthopsilosis Co 9 273371 Fungi Fungi 58.4 3.89e-4   NTclustered gi|448520311|ref|XM_003868228.1| 1136231 g6176 i0 94.595 0.178743961352657 37 2 18 0 90 126 256 220 Candida orthopsilosis Co 90-125 peptidyl-prolyl cis-trans isomerase (CORT_0B11430), partial mRNA blastn 37 58.4 1 Eukaryota Opisthokonta Fungi Ascomycota Pichiomycetes Serinales Debaryomycetaceae Candida Candida orthopsilosis
25751894 25751894 PRJEB6054_S_NODE_5842_length_212_cov_1669.429379_g5753_i0 PRJEB6054 5842 212 1669.429379 3539.19028348 root 1 Root_unresolved Root_unresolved 281 2.18e-71   NTclustered gi|1280049812|gb|MF072571.1| 29917 g5753 i0 100 71.7028301886792 152 0 72 0 1 152 553 704 Cladosporium cladosporioides strain 007 small subunit ribosomal RNA gene, partial sequence blastn 15201 283 0.992932862190813 Eukaryota Opisthokonta Fungi Ascomycota Dothideomycetes Cladosporiales Cladosporiaceae Cladosporium Cladosporium cladosporioides
25887596 25887596 PRJEB6054_S_NODE_2475_length_284_cov_26.598394_g2386_i0 PRJEB6054 2475 284 26.598394 75.53943896 Eukaryota 2759 Fungi Fungi 525 1.2899999999999994e-144   NTclustered gi|514829572|gb|KC771883.1| 4929 g2386 i0 100 87.3028169014084 284 0 100 0 1 284 308 25 Meyerozyma guilliermondii strain SNP3S 26S ribosomal RNA gene, partial sequence blastn 24794 525 1 Eukaryota Opisthokonta Fungi Ascomycota Pichiomycetes Serinales Debaryomycetaceae Meyerozyma Meyerozyma guilliermondii
25931409 25931409 PRJEB6054_S_NODE_6532_length_203_cov_6.720238_g6443_i0 PRJEB6054 6532 203 6.720238 13.64208314 Exophiala lecanii-corni 91925 Fungi Fungi 135 1.71e-27   NTclustered gi|1538946180|gb|CP034382.1| 91925 g6443 i0 85.075 0.660098522167488 134 18 66 2 1 133 3405 3537 Exophiala lecanii-corni strain CBS 102400 mitochondrion, complete genome blastn 134 135 1 Eukaryota Opisthokonta Fungi Ascomycota Eurotiomycetes Chaetothyriales Herpotrichiellaceae Exophiala Exophiala lecanii-corni
26160043 26160043 PRJEB6054_S_NODE_1493_length_334_cov_1528.187291_g1404_i0 PRJEB6054 1493 334 1528.187291 5104.14555194 Fusarium 5506 Fungi Fungi 488 2.03e-133   NTclustered gi|1248497271|tpe|LT906358.1| 5507 g1404 i0 98.551 82.4161676646707 276 4 83 0 59 334 30467 30192 TPA_asm: Fusarium oxysporum strain UASWS_AC1 complete mitochondrion genome blastn 27527 488 1 Eukaryota Opisthokonta Fungi Ascomycota Sordariomycetes Hypocreales Nectriaceae Fusarium Fusarium oxysporum
26160139 26160139 PRJEB6054_S_NODE_7125_length_197_cov_2.814815_g7036_i0 PRJEB6054 7125 197 2.814815 5.54518555 Fusarium 5506 Fungi Fungi 359 8.98e-95   NTclustered gi|2172391745|gb|OM106504.1| 29916 g7036 i0 99.492 100 197 1 100 0 1 197 540 736 Fusarium sp. isolate GLBRC306 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 19700 359 1 Eukaryota Opisthokonta Fungi Ascomycota Sordariomycetes Hypocreales Nectriaceae Fusarium Fusarium sp.
26203493 26203493 PRJEB6054_S_NODE_13846_length_157_cov_1.303279_g13757_i0 PRJEB6054 13846 157 1.303279 2.04614803 Botrytis cinerea B 40559 Fungi Fungi 54.7 0.004   NTclustered gi|1377702045|ref|XM_024690863.1| 332648 g13757 i0 100 0.184713375796178 29 0 18 0 52 80 538 510 Botrytis cinerea B05.10 hypothetical protein (BCIN_01g09830), mRNA blastn 29 54.7 1 Eukaryota Opisthokonta Fungi Ascomycota Leotiomycetes Helotiales Sclerotiniaceae Botrytis Botrytis cinerea
26339301 26339301 PRJEB6054_S_NODE_1495_length_334_cov_145.959866_g1406_i0 PRJEB6054 1495 334 145.959866 487.50595244 Candida pseudojiufengensis 497109 Fungi Fungi 75 6.72e-9   NTclustered gi|2325086120|ref|XM_051758727.1| 497109 g1406 i0 87.5 10.7544910179641 64 8 19 0 43 106 1202 1265 Candida pseudojiufengensis nop56 (KGF55_003885), partial mRNA blastn 3592 75 1 Eukaryota Opisthokonta Fungi Ascomycota Pichiomycetes Serinales Debaryomycetaceae Candida Candida pseudojiufengensis
26431718 26431718 PRJEB6054_S_NODE_11111_length_170_cov_2.377778_g11022_i0 PRJEB6054 11111 170 2.377778 4.0422226 root 1 Root_unresolved Root_unresolved 315 1.64e-81   NTclustered gi|2612872|gb|AF010303.1| 63354 g11022 i0 100 100 170 0 100 0 1 170 663 832 Sclerotium sp. BSC-97 18S ribosomal RNA gene, partial sequence blastn 17000 315 1 Eukaryota Opisthokonta Fungi Ascomycota Leotiomycetes Helotiales Sclerotiniaceae   Sclerotiniaceae sp. BSC-97
26475543 26475543 PRJEB6054_S_NODE_1184_length_359_cov_3.262346_g1096_i0 PRJEB6054 1184 359 3.262346 11.71182214 Candida jiufengensis 497108 Fungi Fungi 89.8 2.59e-13   NTclustered gi|2325100059|ref|XM_051765490.1| 497108 g1096 i0 77.358 2.74930362116992 159 30 43 4 201 356 328 173 Candida jiufengensis uncharacterized protein (KGF54_004758), partial mRNA blastn 987 89.8 1 Eukaryota Opisthokonta Fungi Ascomycota Pichiomycetes Serinales Debaryomycetaceae Candida Candida jiufengensis
32928912 32928912 PRJEB6054_S_NODE_7897_length_190_cov_2.535484_g7808_i0 PRJEB6054 7897 190 2.535484 4.8174196 Cercophora scortea 314031 Fungi Fungi 42 0.0147   NR KAK3335352.1 314031 g7808 i0 39.1 0.726315789473684 46 28 72.6 0 167 30 82 127 KAK3335352.1 hypothetical protein B0T19DRAFT_5808 [Cercophora scortea] diamond 138 42 1 Eukaryota Opisthokonta Fungi Ascomycota Sordariomycetes Sordariales Lasiosphaeriaceae Cercophora Cercophora scortea

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;