RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB6054", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJEB6054 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25658936 25658936 PRJEB6054_S_NODE_2386_length_288_cov_2.110672_g2297_i0 PRJEB6054 2386 288 2.110672 6.07873536 Longimicrobiales bacterium 2910168 Bacteria Bacteria 102 2.61e-17   NTclustered gi|2575820295|emb|OY730414.1| 2910168 g2297 i0 84.112 45.0868055555556 107 15 37 2 48 153 1273691 1273586 MAG: Longimicrobiales bacterium isolate 35361606-ee58-41ba-9638-b7483a57a1ce genome assembly, chromosome: 1 blastn 12985 102 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
25795233 25795233 PRJEB6054_S_NODE_8827_length_183_cov_2.175676_g8738_i0 PRJEB6054 8827 183 2.175676 3.98148708 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 93.5 9.18e-15   NTclustered gi|2874253755|emb|OY969695.1| 412054 g8738 i0 84.946 0.508196721311475 93 13 50 1 87 178 241662 241754 MAG: uncultured Gemmatimonadales bacterium isolate MFD04967.bin.1.34 genome assembly, chromosome: 1 blastn 93 93.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;