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contig_metadata

29 rows where bioproject = "PRJEB6054" and tax_clade = "Embryophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Embryophyta · 29 ✖

bioproject 1

  • PRJEB6054 · 29 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25523022 25523022 PRJEB6054_S_NODE_1705_length_321_cov_4.286713_g1616_i0 PRJEB6054 1705 321 4.286713 13.76034873 Eukaryota 2759 Plants Plants 95.5 1.2e-22   NR NP_001365255.1 3218 g1616 i0 62.5 9.05607476635514 88 31 82.2 1 319 56 50 135 NP_001365255.1 40S ribosomal protein S24-1 [Physcomitrium patens] diamond 2907 95.9 0.995828988529718 Eukaryota Embryophyta Viridiplantae Streptophyta Bryopsida Funariales Funariaceae Physcomitrium Physcomitrium patens
25523067 25523067 PRJEB6054_S_NODE_2601_length_279_cov_2889.213115_g2512_i0 PRJEB6054 2601 279 2889.213115 8060.90459085 Hordeum vulgare subsp. vulgare 112509 Plants Plants 287 6.470000000000001e-73   NTclustered gi|326497356|dbj|AK371065.1| 112509 g2512 i0 96.532 0.806451612903226 173 6 62 0 107 279 1115 943 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2123O06 blastn 225 287 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Hordeum Hordeum vulgare
25658857 25658857 PRJEB6054_S_NODE_13130_length_160_cov_1.920000_g13041_i0 PRJEB6054 13130 160 1.92 3.072 Cucurbita maxima 3661 Plants Plants 126 7.71e-25   NTclustered gi|1281039917|ref|XM_023148805.1| 3661 g13041 i0 85.714 2.9 119 17 74 0 24 142 1253 1135 PREDICTED: Cucurbita maxima ADP,ATP carrier protein 1, mitochondrial-like (LOC111497832), mRNA blastn 464 126 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Cucurbitales Cucurbitaceae Cucurbita Cucurbita maxima
25658950 25658950 PRJEB6054_S_NODE_266_length_545_cov_23.772549_g232_i0 PRJEB6054 266 545 23.772549 129.56039205 Hordeum vulgare subsp. vulgare 112509 Plants Plants 946 0   NTclustered gi|326515281|dbj|AK372356.1| 112509 g232 i0 99.238 7.42201834862385 525 2 96 1 23 545 702 178 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2150G20 blastn 4045 946 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Hordeum Hordeum vulgare
25659034 25659034 PRJEB6054_S_NODE_450_length_476_cov_19.730159_g383_i0 PRJEB6054 450 476 19.730159 93.91555684 Oryza sativa Japonica Group 39947 Plants Plants 270 1.1699999999999997e-67   NTclustered gi|32993583|dbj|AK108374.1| 39947 g383 i0 80.966 45.1827731092437 352 58 73 7 6 351 468 816 Oryza sativa Japonica Group cDNA clone:002-142-D11, full insert sequence blastn 21507 270 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
25659133 25659133 PRJEB6054_S_NODE_6810_length_200_cov_4.169697_g6721_i0 PRJEB6054 6810 200 4.169697 8.339394 Lotus japonicus 34305 Plants Plants 370 4.22e-98   NTclustered gi|388505617|gb|BT141081.1| 34305 g6721 i0 100 35.23 200 0 100 0 1 200 118 317 Lotus japonicus clone JCVI-FLLj-20H3 unknown mRNA blastn 7046 370 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Lotus Lotus japonicus
25659186 25659186 PRJEB6054_S_NODE_9386_length_181_cov_2.397260_g9297_i0 PRJEB6054 9386 181 2.39726 4.3390406 Trichosanthes kirilowii 3677 Plants Plants 52.8 0.015   NTclustered gi|2273792021|gb|MZ427950.1| 3677 g9297 i0 100 0.154696132596685 28 0 15 0 1 28 117166 117193 Trichosanthes kirilowii isolate 16080 chloroplast, complete genome blastn 28 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Cucurbitales Cucurbitaceae Trichosanthes Trichosanthes kirilowii
25794931 25794931 PRJEB6054_S_NODE_139_length_655_cov_38.367742_g120_i0 PRJEB6054 139 655 38.367742 251.3087101 Hordeum vulgare subsp. vulgare 112509 Plants Plants 1016 0   NTclustered gi|326515281|dbj|AK372356.1| 112509 g120 i0 99.819 18.8809160305344 554 0 85 1 102 655 1455 903 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2150G20 blastn 12367 1016 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Hordeum Hordeum vulgare
25794944 25794944 PRJEB6054_S_NODE_14891_length_154_cov_1.302521_g14802_i0 PRJEB6054 14891 154 1.302521 2.00588234 Nymphaea colorata 210225 Plants Plants 106 9.56e-19   NTclustered gi|1750920517|emb|LR722089.1| 210225 g14802 i0 82.906 1.22727272727273 117 20 76 0 38 154 12487 12371 XXX blastn 189 106 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Nymphaeales Nymphaeaceae Nymphaea Nymphaea colorata
25931107 25931107 PRJEB6054_S_NODE_10764_length_172_cov_2.291971_g10675_i0 PRJEB6054 10764 172 2.291971 3.94219012 Hordeum vulgare subsp. vulgare 112509 Plants Plants 303 3.61e-78   NTclustered gi|326524144|dbj|AK365880.1| 112509 g10675 i0 99.401 60.8720930232558 167 1 97 0 6 172 1357 1191 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2038I16 blastn 10470 303 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Hordeum Hordeum vulgare
25931142 25931142 PRJEB6054_S_NODE_12964_length_161_cov_1.396825_g12875_i0 PRJEB6054 12964 161 1.396825 2.24888825 Oryza sativa Indica Group 39946 Plants Plants 267 4.39e-67   NTclustered gi|116630914|emb|CT837468.1| 39946 g12875 i0 98.667 0.93167701863354 150 2 93 0 12 161 583 434 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105A06, full insert sequence blastn 150 267 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
25931187 25931187 PRJEB6054_S_NODE_15860_length_150_cov_3.547826_g15771_i0 PRJEB6054 15860 150 3.547826 5.321739 Spinacia oleracea 3562 Plants Plants 52.8 0.012   NTclustered gi|2514608013|ref|XM_056838699.1| 3562 g15771 i0 100 0.186666666666667 28 0 19 0 100 127 571 544 PREDICTED: Spinacia oleracea uncharacterized LOC110794596 (LOC110794596), mRNA blastn 28 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Caryophyllales Chenopodiaceae Spinacia Spinacia oleracea
25931314 25931314 PRJEB6054_S_NODE_3980_length_239_cov_3.132353_g3891_i0 PRJEB6054 3980 239 3.132353 7.48632367 Oryza sativa Japonica Group 39947 Plants Plants 296 8.99e-76   NTclustered gi|32972527|dbj|AK062509.1| 39947 g3891 i0 96.154 1.35146443514644 182 6 88 1 1 182 237 417 Oryza sativa Japonica Group cDNA clone:001-104-B11, full insert sequence blastn 323 296 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
26203592 26203592 PRJEB6054_S_NODE_262_length_547_cov_24507.111328_g228_i0 PRJEB6054 262 547 24507.111328 134053.89896416 Oryza sativa Japonica Group 39947 Plants Plants 272 3.7899999999999986e-68   NTclustered gi|32993583|dbj|AK108374.1| 39947 g228 i0 82.39 42.1572212065814 318 50 58 6 228 542 782 468 Oryza sativa Japonica Group cDNA clone:002-142-D11, full insert sequence blastn 23060 272 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
26203751 26203751 PRJEB6054_S_NODE_6630_length_202_cov_3.215569_g6541_i0 PRJEB6054 6630 202 3.215569 6.49544938 Medicago truncatula 3880 Plants Plants 235 1.6299999999999997e-57   NTclustered gi|90656477|gb|DQ455530.1| 3880 g6541 i0 89.785 1.75742574257426 186 16 92 3 13 198 1 183 Medicago truncatula cDNA-AFLP fragment BT43M22_480 sequence blastn 355 235 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Medicago Medicago truncatula
26295800 26295800 PRJEB6054_S_NODE_1342_length_345_cov_4.729032_g1253_i0 PRJEB6054 1342 345 4.729032 16.3151604 Oryza 4527 Plants Plants 52.8 0.033   NTclustered gi|28460560|emb|AL731749.3| 39947 g1253 i0 100 0.16231884057971 28 0 8 0 227 254 20174 20147 Oryza sativa chromosome 12, . BAC OJ1312_H10 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence blastn 56 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
26339439 26339439 PRJEB6054_S_NODE_4071_length_237_cov_3.376238_g3982_i0 PRJEB6054 4071 237 3.376238 8.00168406 Hordeum vulgare subsp. vulgare 112509 Plants Plants 292 1.15e-74   NTclustered gi|326488240|dbj|AK362585.1| 112509 g3982 i0 100 0.666666666666667 158 0 67 0 1 158 580 737 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2008H07 blastn 158 292 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Hordeum Hordeum vulgare
26431738 26431738 PRJEB6054_S_NODE_1503_length_334_cov_3.160535_g1414_i0 PRJEB6054 1503 334 3.160535 10.5561869 Oryza 4527 Plants Plants 52.8 0.031   NTclustered gi|28460560|emb|AL731749.3| 39947 g1414 i0 100 0.167664670658683 28 0 8 0 92 119 20147 20174 Oryza sativa chromosome 12, . BAC OJ1312_H10 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence blastn 56 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
26431741 26431741 PRJEB6054_S_NODE_15871_length_150_cov_3.078261_g15782_i0 PRJEB6054 15871 150 3.078261 4.6173915 Magnoliopsida 3398 Plants Plants 63.9 5.64e-6   NTclustered gi|2029616046|ref|XR_005905404.1| 3635 g15782 i0 95 23.1 40 2 27 0 2 41 2603 2564 PREDICTED: Gossypium hirsutum 28S ribosomal RNA (LOC121210286), rRNA blastn 3465 63.9 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Malvales Malvaceae Gossypium Gossypium hirsutum
26475535 26475535 PRJEB6054_S_NODE_11600_length_167_cov_2.121212_g11511_i0 PRJEB6054 11600 167 2.121212 3.54242404 Trichophorum cespitosum 76515 Plants Plants 111 2.28e-20   NTclustered gi|2919517562|emb|OZ238292.1| 76515 g11511 i0 89.13 45.9760479041916 92 7 53 3 79 167 2248448 2248357 Trichophorum cespitosum genome assembly, chromosome: 24 blastn 7678 111 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Cyperaceae Trichophorum Trichophorum cespitosum
26475561 26475561 PRJEB6054_S_NODE_13144_length_160_cov_1.600000_g13055_i0 PRJEB6054 13144 160 1.6 2.56 Malpighia emarginata 151847 Plants Plants 54.7 0.004   NTclustered gi|2783005970|dbj|AP035821.1| 151847 g13055 i0 100 0.18125 29 0 18 0 89 117 1176614 1176642 Malpighia emarginata NRA309 DNA, sequence_id:NRA309p0029, complete sequence blastn 29 54.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Malpighiales Malpighiaceae Malpighia Malpighia emarginata
26475580 26475580 PRJEB6054_S_NODE_14192_length_156_cov_0.991736_g14103_i0 PRJEB6054 14192 156 0.991736 1.54710816 Brassica oleracea 3712 Plants Plants 52.8 0.013   NTclustered gi|1516555473|emb|LR031873.1| 3712 g14103 i0 100 0.179487179487179 28 0 18 0 77 104 33301957 33301984 Brassica oleracea HDEM genome, scaffold: C4 blastn 28 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Brassica Brassica oleracea
26567782 26567782 PRJEB6054_S_NODE_11744_length_166_cov_2.442748_g11655_i0 PRJEB6054 11744 166 2.442748 4.05496168 Eukaryota 2759 Plants Plants 100 4.9e-17   NTclustered gi|2070778936|ref|XR_006143621.1| 60698 g11655 i0 89.873 5.02409638554217 79 7 47 1 69 146 2907 2829 PREDICTED: Macadamia integrifolia 28S ribosomal RNA (LOC122090396), rRNA blastn 834 100 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Proteales Proteaceae Macadamia Macadamia integrifolia
26567799 26567799 PRJEB6054_S_NODE_15968_length_150_cov_1.113043_g15879_i0 PRJEB6054 15968 150 1.113043 1.6695645 Myrtaceae 3931 Plants Plants 217 4.089999999999999e-52   NTclustered gi|1973659068|ref|XR_005550686.1| 71139 g15879 i0 96.899 85.62 129 4 86 0 22 150 1451 1323 PREDICTED: Eucalyptus grandis 28S ribosomal RNA (LOC120293022), rRNA blastn 12843 217 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Myrtales Myrtaceae Eucalyptus Eucalyptus grandis
33008463 33008463 PRJEB6054_S_NODE_5155_length_222_cov_7.165775_g5066_i0 PRJEB6054 5155 222 7.165775 15.9080205 Eukaryota 2759 Plants Plants 41.2 0.0259   NR CAK8537586.1 3860 g5066 i0 72.7 0.594594594594595 22 6 29.7 0 109 174 70 91 CAK8537586.1 unnamed protein product [Lathyrus sativus] diamond 132 41.2 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Lathyrus Lathyrus sativus
33025687 33025687 PRJEB6054_S_NODE_11428_length_168_cov_2.293233_g11339_i0 PRJEB6054 11428 168 2.293233 3.85263144 root 1 Root_unresolved Root_unresolved 107 3.1699999999999997e-25   NR GEU28118.1 118510 g11339 i0 96.4 38 56 2 100 0 168 1 43 98 GEU28118.1 succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [Tanacetum cinerariifolium] diamond 6384 108 0.990740740740741 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Asterales Asteraceae Tanacetum Tanacetum cinerariifolium
33031380 33031380 PRJEB6054_S_NODE_4908_length_226_cov_1.638743_g4819_i0 PRJEB6054 4908 226 1.638743 3.70355918 Herrania umbratica 108875 Plants Plants 70.9 1.72e-13   NR XP_021298165.1 108875 g4819 i0 68 0.663716814159292 50 16 66.4 0 224 75 87 136 XP_021298165.1 40S ribosomal protein S12 [Herrania umbratica] diamond 150 70.9 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Malvales Malvaceae Herrania Herrania umbratica
33110811 33110811 PRJEB6054_S_NODE_14526_length_155_cov_1.000000_g14437_i0 PRJEB6054 14526 155 1 1.55 Eukaryota 2759 Plants Plants 47.4 2.62e-4   NR KAH9627494.1 39905 g14437 i0 57.8 3.65806451612903 45 17 83.2 1 3 131 265 309 KAH9627494.1 hypothetical protein KSS87_006185 [Heliosperma pusillum] diamond 567 47.8 0.99163179916318 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Caryophyllales Caryophyllaceae Heliosperma Heliosperma pusillum
33161970 33161970 PRJEB6054_S_NODE_11776_length_166_cov_1.557252_g11687_i0 PRJEB6054 11776 166 1.557252 2.58503832 Caryophyllaceae 3568 Plants Plants 53.5 1.5e-6   NR KAK9698499.1 3572 g11687 i0 58.7 6.75903614457831 46 19 83.1 0 160 23 5 50 KAK9698499.1 hypothetical protein RND81_08G109000 [Saponaria officinalis] diamond 1122 53.9 0.992578849721707 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Caryophyllales Caryophyllaceae Saponaria Saponaria officinalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;