RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJEB6054", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 3 ✖

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJEB6054 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25794869 25794869 PRJEB6054_S_NODE_1067_length_370_cov_37475.134328_g979_i0 PRJEB6054 1067 370 37475.134328 138657.9970136 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 329 1.45e-85   NTclustered gi|292559443|ref|NC_013986.1| 5778 g979 i0 87.285 13.2162162162162 291 33 78 4 4 292 26736 27024 Hartmannella vermiformis mitochondrion, complete genome blastn 4890 329 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
26023923 26023923 PRJEB6054_S_NODE_5004_length_224_cov_4.507937_g4915_i0 PRJEB6054 5004 224 4.507937 10.09777888 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 399 6.169999999999998e-107   NTclustered gi|300078496|gb|GU001158.1| 5778 g4915 i0 99.099 28.65625 222 2 99 0 3 224 996 1217 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6419 399 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
26475841 26475841 PRJEB6054_S_NODE_7248_length_196_cov_2.360248_g7159_i0 PRJEB6054 7248 196 2.360248 4.62608608 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 198 2.06e-46   NTclustered gi|511487963|gb|JX898537.1| 1260765 g7159 i0 85.204 11.7040816326531 196 26 100 3 1 196 301 109 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 2294 198 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;