RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJEB6054", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 5 ✖

tax_clade 1

  • Amoebozoa · 5 ✖

bioproject 1

  • PRJEB6054 · 5 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25794993 25794993 PRJEB6054_S_NODE_2275_length_292_cov_49088.509728_g2186_i0 PRJEB6054 2275 292 49088.509728 143338.44840576 Cochliopodium larifeili 1017091 Discosea other_Eukaryota 388 1.82e-103   NTclustered gi|330902855|gb|JF298253.1| 1017091 g2186 i0 97.778 36.9075342465753 225 5 77 0 1 225 1514 1738 Cochliopodium larifeili clone 901 18S ribosomal RNA gene, partial sequence blastn 10777 388 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili
25795070 25795070 PRJEB6054_S_NODE_3883_length_241_cov_6.043689_g3794_i0 PRJEB6054 3883 241 6.043689 14.56529049 Ripella platypodia 2047821 Discosea other_Eukaryota 189 1.58e-43   NTclustered gi|1269228362|gb|MF683487.1| 2047821 g3794 i0 84.08 78.3526970954357 201 26 82 6 43 239 1361 1163 Ripella platypodia clone 23.4.38 18S ribosomal RNA gene, partial sequence blastn 18883 189 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella platypodia
25931480 25931480 PRJEB6054_S_NODE_9988_length_177_cov_2.739437_g9899_i0 PRJEB6054 9988 177 2.739437 4.84880349 Cochliopodium minus 313997 Discosea other_Eukaryota 270 3.7899999999999986e-68   NTclustered gi|330902862|gb|JF298257.1| 313997 g9899 i0 96.364 10.5875706214689 165 4 93 2 14 177 202 39 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 1874 270 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
26067188 26067188 PRJEB6054_S_NODE_13_length_1025_cov_29.479798_g12_i0 PRJEB6054 13 1025 29.479798 302.1679295 Ripella sp. 8 1973050 Discosea other_Eukaryota 1531 0   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g12 i0 94.379 99.4653658536585 1014 29 99 12 3 1015 987 1 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 101952 1531 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
26339309 26339309 PRJEB6054_S_NODE_15623_length_151_cov_3.094828_g15534_i0 PRJEB6054 15623 151 3.094828 4.67319028 Stenamoeba limacina 746894 Discosea other_Eukaryota 241 2.4500000000000008e-59   NTclustered gi|292399455|gb|GU810183.1| 746894 g15534 i0 95.364 91.4966887417219 151 7 100 0 1 151 2082 2232 Stenamoeba limacina strain 4692L small subunit ribosomal RNA gene, partial sequence blastn 13816 241 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Stenamoeba Stenamoeba limacina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;