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contig_metadata

30 rows where bioproject = "PRJEB58983" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 30 ✖

tax_clade 1

bioproject 1

  • PRJEB58983 · 30 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
124676 124676 PRJEB58983_P_NODE_14561_length_334_cov_1.379310_g14146_i0 PRJEB58983 14561 334 1.37931 4.6068954 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 222 2.27e-53   NTclustered gi|2794879146|ref|XM_067888617.1| 164328 g14146 i0 79.936 48.2964071856287 314 53 93 8 23 331 531 223 Phytophthora ramorum Guanine nucleotide-binding protein subunit beta-like protein (KRP23_392), partial mRNA blastn 16131 222 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
124785 124785 PRJEB58983_P_NODE_20521_length_287_cov_1.602804_g20106_i0 PRJEB58983 20521 287 1.602804 4.60004748 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 215 3.2e-51   NTclustered gi|2795021165|ref|XM_067935669.1| 4785 g20106 i0 82.4 80.8606271777004 250 40 86 3 1 248 1089 1336 Phytophthora cinnamomi ATP synthase subunit beta, mitochondrial (IUM83_11126), partial mRNA blastn 23207 215 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
125220 125220 PRJEB58983_P_NODE_8721_length_421_cov_2.635057_g8307_i0 PRJEB58983 8721 421 2.635057 11.09358997 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 761 0   NTclustered gi|698793876|ref|XR_717098.1| 112090 g8307 i0 99.287 101.232779097387 421 3 100 0 1 421 2109 2529 Aphanomyces astaci 28S ribosomal RNA rRNA blastn 42619 761 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
2267340 2267340 PRJEB58983_P_NODE_19082_length_295_cov_3.666667_g18667_i0 PRJEB58983 19082 295 3.666667 10.81666765 Verrucalvaceae 120409 SAR_Eukaryotes SAR_Eukaryotes 540 4.79e-149   NTclustered gi|319769384|gb|HQ343196.1| 112092 g18667 i0 99.661 99.664406779661 295 1 100 0 1 295 917 623 Aphanomyces laevis strain CBS 127282 18S ribosomal RNA gene, partial sequence blastn 29401 545 0.990825688073395 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces laevis
2674873 2674873 PRJEB58983_P_NODE_19843_length_291_cov_1.073394_g19428_i0 PRJEB58983 19843 291 1.073394 3.12357654 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 460 3.78e-125   NTclustered gi|166042839|emb|CU353349.1| 100861 g19428 i0 95.189 13.2749140893471 291 14 100 0 1 291 747 457 Aphanomyces euteiches cDNA blastn 3863 460 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
3950876 3950876 PRJEB58983_P_NODE_19204_length_295_cov_1.000000_g18789_i0 PRJEB58983 19204 295 1 2.95 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 224 5.48e-54   NTclustered gi|675169410|ref|XM_008895342.1| 761204 g18789 i0 81.852 54.7898305084746 270 46 91 2 29 295 303 572 Phytophthora parasitica INRA-310 adenosylhomocysteinase mRNA blastn 16163 224 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
3951197 3951197 PRJEB58983_P_NODE_35404_length_204_cov_9.816794_g34989_i0 PRJEB58983 35404 204 9.816794 20.02625976 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 244 2.7399999999999997e-60   NTclustered gi|813199067|ref|XR_001099866.1| 695850 g34989 i0 88.35 39.4019607843137 206 20 100 4 1 204 1483 1686 Saprolegnia parasitica CBS 223.65 28S ribosomal RNA rRNA blastn 8038 244 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
11603072 11603072 PRJEB58983_P_NODE_11890_length_365_cov_2.386986_g11475_i0 PRJEB58983 11890 365 2.386986 8.7124989 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 239 2.48e-58   NTclustered gi|675211346|ref|XM_008916310.1| 761204 g11475 i0 81.293 24.0219178082192 294 55 81 0 7 300 134 427 Phytophthora parasitica INRA-310 60S ribosomal protein L44 mRNA blastn 8768 239 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
11603692 11603692 PRJEB58983_P_NODE_8110_length_435_cov_2.127072_g7696_i0 PRJEB58983 8110 435 2.127072 9.2527632 Pythium insidiosum 114742 SAR_Eukaryotes SAR_Eukaryotes 171 3.31e-51   NR KAJ0392104.1 114742 g7696 i0 64.1 4.40689655172414 128 46 88.3 0 2 385 48 175 KAJ0392104.1 hypothetical protein P43SY_009801 [Pythium insidiosum] diamond 1917 171 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
12471127 12471127 PRJEB58983_P_NODE_33430_length_235_cov_3.746914_g33015_i0 PRJEB58983 33430 235 3.746914 8.8052479 root 1 Root_unresolved Root_unresolved 401 1.8199999999999993e-107   NTclustered gi|50261276|ref|NC_005984.1| 4770 g33015 i0 97.447 104.714893617021 235 6 100 0 1 235 7451 7685 Saprolegnia ferax mitochondrion, complete genome blastn 24608 401 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia ferax
12878272 12878272 PRJEB58983_P_NODE_13171_length_349_cov_1.413043_g12756_i0 PRJEB58983 13171 349 1.413043 4.93152007 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 149 4.8899999999999997e-39   NR KUF88495.1 4792 g12756 i0 66.7 19.7449856733524 111 37 95.4 0 348 16 543 653 KUF88495.1 3-ketoacyl-CoA thiolase A [Phytophthora nicotianae] diamond 6891 150 0.993333333333333 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
12878368 12878368 PRJEB58983_P_NODE_1791_length_953_cov_6.560227_g1458_i0 PRJEB58983 1791 953 6.560227 62.51896331 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 1585 0   NTclustered gi|1111669722|ref|NC_032051.1| 112090 g1458 i0 96.66 106.964323189927 958 25 100 7 1 953 1872 2827 Aphanomyces astaci isolate AP03 mitochondrion, complete genome blastn 101937 1585 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
12878402 12878402 PRJEB58983_P_NODE_19231_length_294_cov_3.389140_g18816_i0 PRJEB58983 19231 294 3.38914 9.9640716 Achlya hypogyna 1202772 SAR_Eukaryotes SAR_Eukaryotes 488 1.7499999999999996e-133   NTclustered gi|542687346|ref|NC_022178.1| 1202772 g18816 i0 96.622 109.894557823129 296 6 99 2 2 294 6227 5933 Achlya hypogyna mitochondrion, complete genome blastn 32309 488 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya hypogyna
12878892 12878892 PRJEB58983_P_NODE_9551_length_403_cov_9.754545_g9137_i0 PRJEB58983 9551 403 9.754545 39.31081635 Aphanomyces sp. 1982524 SAR_Eukaryotes SAR_Eukaryotes 745 0   NTclustered gi|1578815424|gb|MK546601.1| 1982524 g9137 i0 100 99.985111662531 403 0 100 0 1 403 573 171 Aphanomyces sp. voucher CCIBt4545 large subunit ribosomal RNA gene, partial sequence blastn 40294 745 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces sp.
15427161 15427161 PRJEB58983_P_NODE_17393_length_308_cov_2.629787_g16978_i0 PRJEB58983 17393 308 2.629787 8.09974396 Saprolegnia ferax 4770 SAR_Eukaryotes SAR_Eukaryotes 473 5.179999999999999e-129   NTclustered gi|50261276|ref|NC_005984.1| 4770 g16978 i0 94.481 107.282467532468 308 15 100 2 1 308 10630 10935 Saprolegnia ferax mitochondrion, complete genome blastn 33043 473 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia ferax
17976829 17976829 PRJEB58983_P_NODE_8975_length_415_cov_3.163743_g8561_i0 PRJEB58983 8975 415 3.163743 13.12953345 Achlya hypogyna 1202772 SAR_Eukaryotes SAR_Eukaryotes 178 6.31e-40   NTclustered gi|542687346|ref|NC_022178.1| 1202772 g8561 i0 79.505 38.0120481927711 283 33 63 13 149 406 8370 8088 Achlya hypogyna mitochondrion, complete genome blastn 15775 178 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya hypogyna
20525694 20525694 PRJEB58983_P_NODE_16817_length_313_cov_2.220833_g16402_i0 PRJEB58983 16817 313 2.220833 6.95120729 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 172 3.98e-50   NR TMW60420.1 41045 g16402 i0 76.7 4.95527156549521 103 24 98.7 0 4 312 169 271 TMW60420.1 hypothetical protein Poli38472_000462 [Pythium oligandrum] diamond 1551 172 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
23076913 23076913 PRJEB58983_P_NODE_22699_length_276_cov_1.167488_g22284_i0 PRJEB58983 22699 276 1.167488 3.22226688 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 200 8.56e-47   NTclustered gi|675196130|ref|XM_008908702.1| 761204 g22284 i0 81.667 65.9094202898551 240 44 87 0 3 242 676 437 Phytophthora parasitica INRA-310 hypothetical protein mRNA blastn 18191 200 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
23077051 23077051 PRJEB58983_P_NODE_29899_length_248_cov_0.891429_g29484_i0 PRJEB58983 29899 248 0.891429 2.21074392 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 204 5.849999999999999e-48   NTclustered gi|695460286|ref|XM_009539659.1| 67593 g29484 i0 81.452 72.875 248 46 100 0 1 248 2693 2940 Phytophthora sojae putative ATPase mRNA blastn 18073 204 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
23077118 23077118 PRJEB58983_P_NODE_33019_length_238_cov_2.860606_g32604_i0 PRJEB58983 33019 238 2.860606 6.80824228 Aphanomyces stellatus 120398 SAR_Eukaryotes SAR_Eukaryotes 440 3.899999999999999e-119   NTclustered gi|363498776|gb|JN662487.1| 120398 g32604 i0 100 98.2436974789916 238 0 100 0 1 238 274 37 Aphanomyces stellatus strain GF 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 23382 440 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus
23077151 23077151 PRJEB58983_P_NODE_35079_length_214_cov_18.326241_g34664_i0 PRJEB58983 35079 214 18.326241 39.21815574 Aphanomyces sp. 1982524 SAR_Eukaryotes SAR_Eukaryotes 396 7.559999999999996e-106   NTclustered gi|1186441155|gb|KY989960.1| 1982524 g34664 i0 100 98.373831775700907 214 0 100 0 1 214 425 212 Aphanomyces sp. isolate CNUaq small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 21052 396 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces sp.
27406320 27406320 PRJEB58983_P_NODE_6423_length_486_cov_3.186441_g6009_i0 PRJEB58983 6423 486 3.186441 15.48610326 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 106 1.96e-25   NR KAK1947371.1 4793 g6009 i0 42 7.25308641975309 157 84 94.4 2 477 19 32 185 KAK1947371.1 60S ribosomal protein L23a [Phytophthora citrophthora] diamond 3525 107 0.990654205607477 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora citrophthora
28801910 28801910 PRJEB58983_P_NODE_9628_length_402_cov_2.142857_g9214_i0 PRJEB58983 9628 402 2.142857 8.61428514 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 75.9 5.87e-13   NR XP_067737212.1 164328 g9214 i0 56.7 4.02985074626866 60 26 44.8 0 401 222 1203 1262 XP_067737212.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Phytophthora ramorum] diamond 1620 75.9 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
29552879 29552879 PRJEB58983_P_NODE_22670_length_276_cov_1.458128_g22255_i0 PRJEB58983 22670 276 1.458128 4.02443328 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 90.9 4.6e-19   NR KAG1686551.1 4784 g22255 i0 49.4 14.5217391304348 89 40 96.7 2 267 1 309 392 KAG1686551.1 hypothetical protein DVH05_006453 [Phytophthora capsici] diamond 4008 91.7 0.991275899672846 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
29900599 29900599 PRJEB58983_P_NODE_33071_length_238_cov_2.339394_g32656_i0 PRJEB58983 33071 238 2.339394 5.56775772 root 1 Root_unresolved Root_unresolved 45.8 0.0029   NR KAH9157343.1 100861 g32656 i0 40 5.77310924369748 65 36 81.9 1 200 6 1953 2014 KAH9157343.1 hypothetical protein AeRB84_000815 [Aphanomyces euteiches] diamond 1374 45.8 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
30121467 30121467 PRJEB58983_P_NODE_3132_length_698_cov_2.267200_g2740_i0 PRJEB58983 3132 698 2.2672 15.825056 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 138 5.19e-36   NR KAJ8578052.1 4785 g2740 i0 62.8 2.39828080229226 113 38 46.8 1 74 400 116 228 KAJ8578052.1 hypothetical protein ON010_g1153 [Phytophthora cinnamomi] diamond 1674 138 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
30286777 30286777 PRJEB58983_P_NODE_20352_length_288_cov_1.460465_g19937_i0 PRJEB58983 20352 288 1.460465 4.2061392 Pythium insidiosum 114742 SAR_Eukaryotes SAR_Eukaryotes 146 2.16e-38   NR GLD96693.1 114742 g19937 i0 78.1 4 96 21 100 0 288 1 84 179 GLD96693.1 hypothetical protein PINS_up005376 [Pythium insidiosum] diamond 1152 146 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
31006253 31006253 PRJEB58983_P_NODE_24334_length_268_cov_1.594872_g23919_i0 PRJEB58983 24334 268 1.594872 4.27425696 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 49.7 1.85e-4   NR KAF0727981.1 100861 g23919 i0 46.7 3.91791044776119 45 24 50.4 0 264 130 417 461 KAF0727981.1 hypothetical protein Ae201684_014090 [Aphanomyces euteiches] diamond 1050 49.7 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
31265922 31265922 PRJEB58983_P_NODE_29855_length_248_cov_0.891429_g29440_i0 PRJEB58983 29855 248 0.891429 2.21074392 Pythium insidiosum 114742 SAR_Eukaryotes SAR_Eukaryotes 102 5.209999999999999e-23   NR KAJ0412271.1 114742 g29440 i0 66.7 7.37903225806452 75 25 90.7 0 229 5 292 366 KAJ0412271.1 hypothetical protein ATCC90586_006657 [Pythium insidiosum] diamond 1830 102 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
31613806 31613806 PRJEB58983_P_NODE_34316_length_229_cov_3.397436_g33901_i0 PRJEB58983 34316 229 3.397436 7.78012844 Pythium insidiosum 114742 SAR_Eukaryotes SAR_Eukaryotes 50.1 7.65e-5   NR GLD92577.1 114742 g33901 i0 35.2 0.930131004366812 71 45 93 1 1 213 195 264 GLD92577.1 hypothetical protein PINS_up001136 [Pythium insidiosum] diamond 213 50.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;