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contig_metadata

7 rows where bioproject = "PRJEB58983" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB58983 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1399163 1399163 PRJEB58983_P_NODE_16042_length_320_cov_1.186235_g15627_i0 PRJEB58983 16042 320 1.186235 3.795952 Pristionchus sp. 15 RS5229 452809 Nematoda Nematoda 183 1.02e-41   NTclustered gi|150982147|gb|EF634662.1| 452809 g15627 i0 87.821 49.153125 156 19 49 0 151 306 165 10 Pristionchus sp. 15 RS5229 large subunit ribosomal protein 27a (rpl-27a) mRNA, partial cds blastn 15729 183 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 15 RS5229
2675031 2675031 PRJEB58983_P_NODE_27083_length_256_cov_1.519126_g26668_i0 PRJEB58983 27083 256 1.519126 3.88896256 Diplogastrellus gracilis 669117 Nematoda Nematoda 158 4.79e-34   NTclustered gi|256709130|gb|GQ422217.1| 669117 g26668 i0 82.162 66.2109375 185 31 72 2 73 256 723 540 Diplogastrellus gracilis large subunit ribosomal protein 2 (rpl-2) mRNA, partial cds blastn 16950 158 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Diplogastrellus Diplogastrellus gracilis
14153018 14153018 PRJEB58983_P_NODE_10272_length_390_cov_2.779180_g9857_i0 PRJEB58983 10272 390 2.77918 10.838802 Caenorhabditis elegans 6239 Nematoda Nematoda 270 9.45e-68   NTclustered gi|1109667|gb|U31077.1|CEU31077 6239 g9857 i0 80.938 67.748717948718 341 65 87 0 45 385 490 150 Caenorhabditis elegans cyclophilin isoform 3 (cyp-3) mRNA, complete cds blastn 26422 270 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
27823512 27823512 PRJEB58983_P_NODE_32064_length_243_cov_0.917647_g31649_i0 PRJEB58983 32064 243 0.917647 2.22988221 Auanema sp. JU1783 2878363 Nematoda Nematoda 116 8.22e-29   NR CAI4230971.1 2878363 g31649 i0 59.5 0.975308641975309 79 32 97.5 0 3 239 95 173 CAI4230971.1 unnamed protein product [Auanema sp. JU1783] diamond 237 116 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Auanema Auanema sp. JU1783
28770488 28770488 PRJEB58983_P_NODE_27527_length_254_cov_1.718232_g27112_i0 PRJEB58983 27527 254 1.718232 4.36430928 Aphelenchoides avenae 70226 Nematoda Nematoda 94.7 3.02e-21   NR KAH7710288.1 70226 g27112 i0 52.6 1.84251968503937 78 37 92.1 0 234 1 57 134 KAH7710288.1 CPZ-1 protein [Aphelenchoides avenae] diamond 468 94.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides avenae
30002159 30002159 PRJEB58983_P_NODE_32951_length_239_cov_2.096386_g32536_i0 PRJEB58983 32951 239 2.096386 5.01036254 Dracunculus medinensis 318479 Nematoda Nematoda 63.5 1.63e-9   NR VDN52653.1 318479 g32536 i0 41.9 2.66108786610879 74 42 92.9 1 5 226 46 118 VDN52653.1 unnamed protein product, partial [Dracunculus medinensis] diamond 636 63.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Dracunculidae Dracunculus Dracunculus medinensis
32056682 32056682 PRJEB58983_P_NODE_6558_length_481_cov_5.595588_g6144_i0 PRJEB58983 6558 481 5.595588 26.91477828 Bursaphelenchus xylophilus 6326 Nematoda Nematoda 202 7.7e-64   NR CAD5208001.1 6326 g6144 i0 66.2 1.81496881496882 145 49 90.4 0 476 42 1 145 CAD5208001.1 unnamed protein product [Bursaphelenchus xylophilus] diamond 873 202 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;