RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB58983" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB58983 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2675020 2675020 PRJEB58983_P_NODE_26663_length_257_cov_6.190217_g26248_i0 PRJEB58983 26663 257 6.190217 15.90885769 uncultured Mycoplasma sp. 167967 Bacteria Bacteria 65.8 3e-6   NTclustered gi|2859863229|gb|PQ631166.1| 167967 g26248 i0 97.368 0.147859922178988 38 1 15 0 1 38 53 90 Uncultured Mycoplasma sp. clone 10 23S ribosomal RNA gene, partial sequence blastn 38 65.8 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma uncultured Mycoplasma sp.
7777568 7777568 PRJEB58983_P_NODE_34027_length_231_cov_3.151899_g33612_i0 PRJEB58983 34027 231 3.151899 7.28088669 uncultured Mycoplasmatota bacterium 658143 Bacteria Bacteria 204 5.3799999999999997e-48   NTclustered gi|2187163482|emb|OV788640.1| 658143 g33612 i0 82.759 51.4718614718615 232 37 100 3 1 231 373492 373721 uncultured Tenericutes bacterium isolate min17_bin11 genome assembly, chromosome: 1 blastn 11890 204 1 Bacteria   Bacillati Mycoplasmatota         uncultured Mycoplasmatota bacterium
9920288 9920288 PRJEB58983_P_NODE_15808_length_322_cov_1.578313_g15393_i0 PRJEB58983 15808 322 1.578313 5.08216786 Bacillati 1783272 Bacteria Bacteria 62.1 5.02e-5   NTclustered gi|2074124807|gb|CP066882.1| 39647 g15393 i0 100 1.21428571428571 33 0 10 0 283 315 417490 417522 Paulownia witches'-broom phytoplasma strain Zhengzhou chromosome, complete genome blastn 391 62.1 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma Paulownia witches'-broom phytoplasma

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;