contig_metadata
22 rows where bioproject = "PRJEB58983", tax_phylum = "Chloroflexota" and tax_superkingdom = "Bacteria"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 4820025 | 4820025 | PRJEB58983_P_NODE_16604_length_315_cov_1.586777_g16189_i0 | PRJEB58983 | 16604 | 315 | 1.586777 | 4.99834755 | Chloroflexota | 200795 | Bacteria | Bacteria | 283 | 9.6e-72 | NTclustered | gi|470485526|ref|NR_076705.1| | 166501 | g16189 | i0 | 89.732 | 184.526984126984 | 224 | 19 | 70 | 4 | 54 | 275 | 906 | 685 | Thermobaculum terrenum strain ATCC BAA-798 23S ribosomal RNA gene, complete sequence | blastn | 58126 | 283 | 1 | Bacteria | Bacillati | Chloroflexota | Chloroflexia | Candidatus Thermobaculales | Candidatus Thermobaculaceae | Thermobaculum | Thermobaculum terrenum | ||
| 5227223 | 5227223 | PRJEB58983_P_NODE_13025_length_350_cov_3.588448_g12610_i0 | PRJEB58983 | 13025 | 350 | 3.588448 | 12.559568 | uncultured Chloroflexia bacterium | 1672391 | Bacteria | Bacteria | 313 | 1.37e-80 | NTclustered | gi|2874253860|emb|OY969916.1| | 1672391 | g12610 | i0 | 83.143 | 208.428571428571 | 350 | 51 | 99 | 8 | 1 | 345 | 274586 | 274932 | MAG: uncultured Chloroflexia bacterium isolate MFD01916.bin.3.39 genome assembly, chromosome: 1 | blastn | 72950 | 313 | 1 | Bacteria | Bacillati | Chloroflexota | Chloroflexia | uncultured Chloroflexia bacterium | |||||
| 5227577 | 5227577 | PRJEB58983_P_NODE_29285_length_249_cov_1.755682_g28870_i0 | PRJEB58983 | 29285 | 249 | 1.755682 | 4.37164818 | Dehalococcoidia bacterium | 2026734 | Bacteria | Bacteria | 65.8 | 2.89e-6 | NTclustered | gi|2108428958|gb|CP070630.1| | 2026734 | g28870 | i0 | 84.848 | 0.265060240963855 | 66 | 8 | 26 | 2 | 7 | 71 | 1308267 | 1308331 | MAG: Dehalococcoidia bacterium isolate bin98 chromosome | blastn | 66 | 65.8 | 1 | Bacteria | Bacillati | Chloroflexota | Dehalococcoidia | Dehalococcoidia bacterium | |||||
| 6502950 | 6502950 | PRJEB58983_P_NODE_1546_length_1023_cov_5.715789_g1237_i0 | PRJEB58983 | 1546 | 1023 | 5.715789 | 58.47252147 | Phototrophicus methaneseepsis | 2710758 | Bacteria | Bacteria | 865 | 0 | NTclustered | gi|1932369605|gb|CP062983.1| | 2710758 | g1237 | i0 | 82.216 | 267.5522971652 | 1029 | 159 | 99 | 23 | 3 | 1023 | 2828618 | 2827606 | Phototrophicus methaneseepsis strain ZRK33 chromosome, complete genome | blastn | 273706 | 865 | 1 | Bacteria | Bacillati | Chloroflexota | Candidatus Thermofontia | Phototrophicales | Phototrophicaceae | Phototrophicus | Phototrophicus methaneseepsis | ||
| 6503076 | 6503076 | PRJEB58983_P_NODE_21586_length_281_cov_2.644231_g21171_i0 | PRJEB58983 | 21586 | 281 | 2.644231 | 7.43028911 | Candidatus Brevifilum fermentans | 1986204 | Bacteria | Bacteria | 337 | 6.389999999999998e-88 | NTclustered | gi|1200880094|emb|LT859958.1| | 1986204 | g21171 | i0 | 89.259 | 523.060498220641 | 270 | 28 | 96 | 1 | 1 | 270 | 679059 | 678791 | Anaerolineaceae bacterium CAMBI-1 genome assembly, chromosome: I | blastn | 146980 | 337 | 1 | Bacteria | Bacillati | Chloroflexota | Anaerolineae | Anaerolineales | Anaerolineaceae | Candidatus Brevifilum | Candidatus Brevifilum fermentans | ||
| 9051851 | 9051851 | PRJEB58983_P_NODE_1068_length_1255_cov_3.263113_g810_i0 | PRJEB58983 | 1068 | 1255 | 3.263113 | 40.95206815 | uncultured Chloroflexia bacterium | 1672391 | Bacteria | Bacteria | 1212 | 0 | NTclustered | gi|2874253860|emb|OY969916.1| | 1672391 | g810 | i0 | 84.665 | 164.26374501992 | 1252 | 152 | 98 | 31 | 1 | 1227 | 274443 | 273207 | MAG: uncultured Chloroflexia bacterium isolate MFD01916.bin.3.39 genome assembly, chromosome: 1 | blastn | 206151 | 1212 | 1 | Bacteria | Bacillati | Chloroflexota | Chloroflexia | uncultured Chloroflexia bacterium | |||||
| 12878321 | 12878321 | PRJEB58983_P_NODE_15771_length_322_cov_2.602410_g15356_i0 | PRJEB58983 | 15771 | 322 | 2.60241 | 8.3797602 | Candidatus Roseilinea sp. | 2838777 | Bacteria | Bacteria | 163 | 1.34e-35 | NTclustered | gi|2314722916|dbj|AP024676.1| | 2838777 | g15356 | i0 | 78.519 | 17.332298136646 | 270 | 42 | 81 | 16 | 22 | 283 | 3495882 | 3495621 | MAG: Candidatus Roseilinea sp. KatS3mg053 DNA, complete genome | blastn | 5581 | 163 | 1 | Bacteria | Candidatus Thermofonsia Clade 3 | Bacillati | Chloroflexota | Candidatus Thermofontia | Candidatus Roseilinea | Candidatus Roseilinea sp. | |||
| 15427501 | 15427501 | PRJEB58983_P_NODE_33673_length_234_cov_2.267081_g33258_i0 | PRJEB58983 | 33673 | 234 | 2.267081 | 5.30496954 | uncultured Chloroflexia bacterium | 1672391 | Bacteria | Bacteria | 172 | 1.54e-38 | NTclustered | gi|2874253882|emb|OY969938.1| | 1672391 | g33258 | i0 | 85.714 | 78.9316239316239 | 168 | 19 | 71 | 4 | 42 | 206 | 2063619 | 2063454 | MAG: uncultured Chloroflexia bacterium isolate MFD02416.bin.c.1 genome assembly, chromosome: 1 | blastn | 18470 | 172 | 1 | Bacteria | Bacillati | Chloroflexota | Chloroflexia | uncultured Chloroflexia bacterium | |||||
| 16701419 | 16701419 | PRJEB58983_P_NODE_15274_length_327_cov_1.578740_g14859_i0 | PRJEB58983 | 15274 | 327 | 1.57874 | 5.1624798 | Candidatus Promineifilum breve | 1806508 | Bacteria | Bacteria | 477 | 4.279999999999999e-130 | NTclustered | gi|1041165931|emb|LN890655.2| | 1806508 | g14859 | i0 | 93.009 | 236.238532110092 | 329 | 20 | 100 | 2 | 1 | 327 | 596334 | 596007 | Ardenticatena sp. Cfx-K strain Cfx-K genome assembly, chromosome: I | blastn | 77250 | 477 | 1 | Bacteria | Bacillati | Chloroflexota | Ardenticatenia | Candidatus Promineifilales | Candidatus Promineifilaceae | Candidatus Promineifilum | Candidatus Promineifilum breve | ||
| 20118574 | 20118574 | PRJEB58983_P_NODE_14276_length_336_cov_4.779468_g13861_i0 | PRJEB58983 | 14276 | 336 | 4.779468 | 16.05901248 | Caldilinea | 233191 | Bacteria | Bacteria | 416 | 9.76e-112 | NTclustered | gi|470476010|ref|NR_076314.1| | 133453 | g13861 | i0 | 90.506 | 111.785714285714 | 316 | 29 | 94 | 1 | 1 | 315 | 2622 | 2937 | Caldilinea aerophila strain STL-6-O1 23S ribosomal RNA gene, complete sequence | blastn | 37560 | 416 | 1 | Bacteria | Bacillati | Chloroflexota | Caldilineae | Caldilineales | Caldilineaceae | Caldilinea | Caldilinea aerophila | ||
| 20525666 | 20525666 | PRJEB58983_P_NODE_15617_length_324_cov_1.342629_g15202_i0 | PRJEB58983 | 15617 | 324 | 1.342629 | 4.35011796 | Dehalococcoidales bacterium | 2026733 | Bacteria | Bacteria | 154 | 1.19e-45 | NR | MDO9333994.1 | 2026733 | g15202 | i0 | 95.2 | 0.768518518518518 | 83 | 3 | 75.9 | 1 | 323 | 78 | 57 | 139 | MDO9333994.1 30S ribosomal protein S4 [Dehalococcoidales bacterium] | diamond | 249 | 154 | 1 | Bacteria | Bacillati | Chloroflexota | Dehalococcoidia | Dehalococcoidales | Dehalococcoidales bacterium | ||||
| 20525701 | 20525701 | PRJEB58983_P_NODE_17177_length_310_cov_2.367089_g16762_i0 | PRJEB58983 | 17177 | 310 | 2.367089 | 7.3379759 | Caldilinea aerophila | 133453 | Bacteria | Bacteria | 108 | 6.09e-19 | NTclustered | gi|381381223|dbj|AP012337.1| | 926550 | g16762 | i0 | 87.234 | 2.80645161290323 | 94 | 12 | 30 | 0 | 68 | 161 | 1718210 | 1718303 | Caldilinea aerophila DSM 14535 = NBRC 104270 DNA, complete genome | blastn | 870 | 108 | 1 | Bacteria | Bacillati | Chloroflexota | Caldilineae | Caldilineales | Caldilineaceae | Caldilinea | Caldilinea aerophila | ||
| 23076703 | 23076703 | PRJEB58983_P_NODE_13299_length_347_cov_2.602190_g12884_i0 | PRJEB58983 | 13299 | 347 | 2.60219 | 9.0295993 | Candidatus Chlorohelix allophototropha | 3003348 | Bacteria | Bacteria | 412 | 1.3099999999999999e-110 | NTclustered | gi|2530750984|gb|CP128400.1| | 3003348 | g12884 | i0 | 88.506 | 643.449567723343 | 348 | 31 | 99 | 7 | 1 | 346 | 320766 | 320426 | Candidatus Chlorohelix allophototropha isolate L227-S17 chromosome 2, complete sequence | blastn | 223277 | 412 | 1 | Bacteria | Bacillati | Chloroflexota | Chloroflexia | Candidatus Chloroheliales | Candidatus Chloroheliaceae | Candidatus Chlorohelix | Candidatus Chlorohelix allophototropha | ||
| 23077192 | 23077192 | PRJEB58983_P_NODE_5259_length_536_cov_2.079914_g4846_i0 | PRJEB58983 | 5259 | 536 | 2.079914 | 11.14833904 | Candidatus Chlorohelix allophototropha | 3003348 | Bacteria | Bacteria | 566 | 1.5199999999999996e-156 | NTclustered | gi|2530750984|gb|CP128400.1| | 3003348 | g4846 | i0 | 87.324 | 194.305970149254 | 497 | 59 | 92 | 3 | 2 | 496 | 319785 | 320279 | Candidatus Chlorohelix allophototropha isolate L227-S17 chromosome 2, complete sequence | blastn | 104148 | 566 | 1 | Bacteria | Bacillati | Chloroflexota | Chloroflexia | Candidatus Chloroheliales | Candidatus Chloroheliaceae | Candidatus Chlorohelix | Candidatus Chlorohelix allophototropha | ||
| 24350985 | 24350985 | PRJEB58983_P_NODE_540_length_1742_cov_7.736369_g388_i0 | PRJEB58983 | 540 | 1742 | 7.736369 | 134.76754798 | Candidatus Promineifilum breve | 1806508 | Bacteria | Bacteria | 1997 | 0 | NTclustered | gi|1041165931|emb|LN890655.2| | 1806508 | g388 | i0 | 87.471 | 235.091848450057 | 1748 | 199 | 99 | 19 | 1 | 1741 | 598958 | 597224 | Ardenticatena sp. Cfx-K strain Cfx-K genome assembly, chromosome: I | blastn | 409530 | 1997 | 1 | Bacteria | Bacillati | Chloroflexota | Ardenticatenia | Candidatus Promineifilales | Candidatus Promineifilaceae | Candidatus Promineifilum | Candidatus Promineifilum breve | ||
| 25218182 | 25218182 | PRJEB58983_P_NODE_22560_length_276_cov_2.679803_g22145_i0 | PRJEB58983 | 22560 | 276 | 2.679803 | 7.39625628 | Bacteria | 2 | Bacteria | Bacteria | 115 | 3.1900000000000003e-21 | NTclustered | gi|374855139|dbj|AP011791.1| | 166587 | g22145 | i0 | 91.667 | 33.6231884057971 | 84 | 6 | 30 | 1 | 1 | 83 | 7787 | 7870 | Uncultured Chloroflexi bacterium DNA, fosmid clone: JFF053_H06 | blastn | 9280 | 115 | 1 | Bacteria | Bacillati | Chloroflexota | uncultured Chloroflexota bacterium | ||||||
| 27760515 | 27760515 | PRJEB58983_P_NODE_8784_length_420_cov_1.631124_g8370_i0 | PRJEB58983 | 8784 | 420 | 1.631124 | 6.8507208 | Caldilinea sp. CFX5 | 2293554 | Bacteria | Bacteria | 211 | 4.63e-65 | NR | MCE7987951.1 | 2293554 | g8370 | i0 | 77 | 0.992857142857143 | 139 | 31 | 99.3 | 1 | 418 | 2 | 60 | 197 | MCE7987951.1 hypothetical protein [Caldilinea sp. CFX5] | diamond | 417 | 211 | 1 | Bacteria | Bacillati | Chloroflexota | Caldilineae | Caldilineales | Caldilineaceae | Caldilinea | Caldilinea sp. CFX5 | ||
| 27886429 | 27886429 | PRJEB58983_P_NODE_29365_length_249_cov_1.346591_g28950_i0 | PRJEB58983 | 29365 | 249 | 1.346591 | 3.35301159 | Caldilineaceae bacterium | 2614250 | Bacteria | Bacteria | 50.1 | 2.83e-5 | NR | MEZ4678006.1 | 2614250 | g28950 | i0 | 78.1 | 0.385542168674699 | 32 | 7 | 38.6 | 0 | 247 | 152 | 39 | 70 | MEZ4678006.1 hypothetical protein [Caldilineaceae bacterium] | diamond | 96 | 50.1 | 1 | Bacteria | Bacillati | Chloroflexota | Caldilineae | Caldilineales | Caldilineaceae | Caldilineaceae bacterium | |||
| 28012963 | 28012963 | PRJEB58983_P_NODE_30925_length_245_cov_1.831395_g30510_i0 | PRJEB58983 | 30925 | 245 | 1.831395 | 4.48691775 | Anaerolineae bacterium | 2052143 | Bacteria | Bacteria | 132 | 7.38e-38 | NR | MCW1968700.1 | 2052143 | g30510 | i0 | 74.1 | 0.991836734693878 | 81 | 21 | 99.2 | 0 | 2 | 244 | 4 | 84 | MCW1968700.1 DUF4288 domain-containing protein [Anaerolineae bacterium] | diamond | 243 | 132 | 1 | Bacteria | Bacillati | Chloroflexota | Anaerolineae | Anaerolineae bacterium | |||||
| 29370555 | 29370555 | PRJEB58983_P_NODE_5509_length_523_cov_3.444444_g5096_i0 | PRJEB58983 | 5509 | 523 | 3.444444 | 18.014442119999998 | Anaerolineae bacterium | 2052143 | Bacteria | Bacteria | 139 | 1.55e-38 | NR | HUM36519.1 | 2052143 | g5096 | i0 | 66.7 | 0.636711281070746 | 111 | 37 | 63.7 | 0 | 1 | 333 | 37 | 147 | HUM36519.1 hypothetical protein [Anaerolineae bacterium] | diamond | 333 | 139 | 1 | Bacteria | Bacillati | Chloroflexota | Anaerolineae | Anaerolineae bacterium | |||||
| 30255077 | 30255077 | PRJEB58983_P_NODE_31852_length_243_cov_1.794118_g31437_i0 | PRJEB58983 | 31852 | 243 | 1.794118 | 4.35970674 | Dictyobacter arantiisoli | 2014874 | Bacteria | Bacteria | 65.9 | 2.08e-10 | NR | WP_149401520.1 | 2014874 | g31437 | i0 | 44 | 0.925925925925926 | 75 | 42 | 92.6 | 0 | 230 | 6 | 61 | 135 | WP_149401520.1 serine/threonine protein kinase [Dictyobacter arantiisoli] | diamond | 225 | 65.9 | 1 | Bacteria | Bacillati | Chloroflexota | Ktedonobacteria | Ktedonobacterales | Dictyobacteraceae | Dictyobacter | Dictyobacter arantiisoli | ||
| 31993406 | 31993406 | PRJEB58983_P_NODE_35398_length_205_cov_4.075758_g34983_i0 | PRJEB58983 | 35398 | 205 | 4.075758 | 8.3553039 | Anaerolineae bacterium | 2052143 | Bacteria | Bacteria | 114 | 1.42e-28 | NR | MBL8120523.1 | 2052143 | g34983 | i0 | 94.1 | 2.98536585365854 | 68 | 4 | 99.5 | 0 | 2 | 205 | 232 | 299 | MBL8120523.1 permease [Anaerolineae bacterium] | diamond | 612 | 114 | 1 | Bacteria | Bacillati | Chloroflexota | Anaerolineae | Anaerolineae bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;