RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB58983" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB58983 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29433290 29433290 PRJEB58983_P_NODE_24790_length_266_cov_1.663212_g24375_i0 PRJEB58983 24790 266 1.663212 4.42414392 Chloroherpeton thalassium 100716 Bacteria Bacteria 72.4 1.57e-12   NR WP_012499151.1 100716 g24375 i0 81 0.473684210526316 42 8 47.4 0 5 130 1 42 WP_012499151.1 tetratricopeptide repeat protein [Chloroherpeton thalassium] diamond 126 72.4 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chloroherpetonaceae Chloroherpeton Chloroherpeton thalassium
30823482 30823482 PRJEB58983_P_NODE_13314_length_347_cov_1.781022_g12899_i0 PRJEB58983 13314 347 1.781022 6.18014634 Chlorobaculum sp. 2053530 Bacteria Bacteria 105 3.16e-26   NR NTW53626.1 2053530 g12899 i0 71.4 0.544668587896254 63 18 54.5 0 3 191 75 137 NTW53626.1 M15 family metallopeptidase [Chlorobaculum sp.] diamond 189 105 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobaculum Chlorobaculum sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;