RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJEB58983" and tax_kingdom = "Thermoproteati"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_kingdom 1

  • Thermoproteati · 4 ✖

bioproject 1

  • PRJEB58983 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7777629 7777629 PRJEB58983_P_NODE_4967_length_549_cov_4.682773_g4555_i0 PRJEB58983 4967 549 4.682773 25.70842377 Acidianus brierleyi 41673 Archaea Archaea 63.9 2.5e-5   NTclustered gi|942626|gb|U32317.1|ABU32317 41673 g4555 i0 82.667 0.30054644808743203 75 9 13 4 337 409 693 765 Acidianus brierleyi 23S rRNA gene, partial sequence blastn 165 63.9 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Acidianus Acidianus brierleyi
26843897 26843897 PRJEB58983_P_NODE_25261_length_264_cov_1.240838_g24846_i0 PRJEB58983 25261 264 1.240838 3.27581232 Candidatus Bathyarchaeota archaeon 2026714 Archaea Archaea 58.5 1.34e-7   NR MCW4013121.1 2026714 g24846 i0 33.3 0.988636363636364 87 58 98.9 0 1 261 410 496 MCW4013121.1 hypothetical protein [Candidatus Bathyarchaeota archaeon] diamond 261 58.5 1 Archaea   Thermoproteati Candidatus Bathyarchaeota         Candidatus Bathyarchaeota archaeon
28132426 28132426 PRJEB58983_P_NODE_29505_length_249_cov_0.886364_g29090_i0 PRJEB58983 29505 249 0.886364 2.20704636 root 1 Root_unresolved Root_unresolved 42.7 0.0385   NR HII04504.1 2024843 g29090 i0 34.8 2.20481927710843 69 45 83.1 0 211 5 228 296 HII04504.1 hypothetical protein [Nitrosopumilus sp.] diamond 549 43.1 0.990719257540603 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosopumilus Nitrosopumilus sp.
32341682 32341682 PRJEB58983_P_NODE_28759_length_250_cov_3.971751_g28344_i0 PRJEB58983 28759 250 3.971751 9.9293775 Nitrosopumilaceae archaeon 2202732 Archaea Archaea 54.3 3.19e-6   NR HWY35735.1 2202732 g28344 i0 44 0.9 75 42 90 0 239 15 249 323 HWY35735.1 hypothetical protein [Nitrosopumilaceae archaeon] diamond 225 54.3 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae   Nitrosopumilaceae archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;