RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJEB58983", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 7 ✖

tax_clade 1

bioproject 1

  • PRJEB58983 · 7 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
125161 125161 PRJEB58983_P_NODE_6201_length_494_cov_2.505938_g5787_i0 PRJEB58983 6201 494 2.505938 12.37933372 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 206 6.38e-64   NR CEO98386.1 37360 g5787 i0 80 0.819838056680162 135 27 82 0 3 407 31 165 CEO98386.1 hypothetical protein PBRA_006500 [Plasmodiophora brassicae] diamond 405 206 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
1399397 1399397 PRJEB58983_P_NODE_26082_length_260_cov_1.796791_g25667_i0 PRJEB58983 26082 260 1.796791 4.6716566 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 114 2.24e-27   NR CEO96359.1 37360 g25667 i0 61.4 7.78846153846154 83 32 95.8 0 255 7 524 606 CEO96359.1 hypothetical protein PBRA_005030 [Plasmodiophora brassicae] diamond 2025 114 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
30121469 30121469 PRJEB58983_P_NODE_3632_length_644_cov_5.619965_g3227_i0 PRJEB58983 3632 644 5.619965 36.1925746 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 184 4.919999999999999e-55   NR CEP02281.1 37360 g3227 i0 51.8 4.67701863354037 199 89 92.7 2 642 46 10 201 CEP02281.1 hypothetical protein PBRA_008865 [Plasmodiophora brassicae] diamond 3012 184 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
30318513 30318513 PRJEB58983_P_NODE_14352_length_336_cov_1.688213_g13937_i0 PRJEB58983 14352 336 1.688213 5.67239568 Spongospora subterranea 70186 SAR_Eukaryotes SAR_Eukaryotes 43.5 0.0138   NR YP_009350057.1 70186 g13937 i0 60 0.3125 35 14 31.3 0 57 161 21 55 YP_009350057.1 hypothetical protein [Spongospora subterranea] diamond 105 43.5 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Spongospora Spongospora subterranea
30665477 30665477 PRJEB58983_P_NODE_27753_length_253_cov_1.955556_g27338_i0 PRJEB58983 27753 253 1.955556 4.94755668 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 58.9 8.51e-8   NR SPQ98611.1 37360 g27338 i0 36.9 1.9802371541502 84 48 97.2 3 4 249 689 769 SPQ98611.1 unnamed protein product [Plasmodiophora brassicae] diamond 501 58.9 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
30728680 30728680 PRJEB58983_P_NODE_30214_length_247_cov_1.362069_g29799_i0 PRJEB58983 30214 247 1.362069 3.36431043 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 50.8 3.97e-5   NR CEP03457.1 37360 g29799 i0 39.2 1.87044534412955 74 34 89.9 2 223 2 129 191 CEP03457.1 hypothetical protein PBRA_003217 [Plasmodiophora brassicae] diamond 462 50.8 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
31139128 31139128 PRJEB58983_P_NODE_5135_length_541_cov_3.756410_g4723_i0 PRJEB58983 5135 541 3.75641 20.3221781 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 181 3.3e-54   NR CEP02281.1 37360 g4723 i0 57.6 10.9408502772643 177 72 98.2 2 532 2 1 174 CEP02281.1 hypothetical protein PBRA_008865 [Plasmodiophora brassicae] diamond 5919 181 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;