RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

23 rows where bioproject = "PRJEB58983", tax_clade = "Opisthokonta" and tax_phylum = "Basidiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Basidiomycota · 23 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 23 ✖

bioproject 1

  • PRJEB58983 · 23 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
124847 124847 PRJEB58983_P_NODE_23261_length_273_cov_1.855000_g22846_i0 PRJEB58983 23261 273 1.855 5.06415 Cryptococcus neoformans 5207 Fungi Fungi 263 1.06e-65   NTclustered gi|799318120|ref|XM_012191959.1| 235443 g22846 i0 87.336 81.4468864468865 229 29 84 0 15 243 398 170 Cryptococcus neoformans var. grubii H99 peptidyl-prolyl cis-trans isomerase (CNAG_03627), mRNA blastn 22235 263 1 Eukaryota Opisthokonta Fungi Basidiomycota Tremellomycetes Tremellales Cryptococcaceae Cryptococcus Cryptococcus neoformans
3542643 3542643 PRJEB58983_P_NODE_21263_length_283_cov_1.485714_g20848_i0 PRJEB58983 21263 283 1.485714 4.20457062 Agaricales 5338 Fungi Fungi 58.4 5.61e-4   NTclustered gi|1488177626|ref|NC_039440.1| 530045 g20848 i0 94.595 3.03886925795053 37 2 13 0 57 93 48503 48539 Blastosporella zonata strain Bzo6 mitochondrion, complete genome blastn 860 58.4 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Agaricales Lyophyllaceae Blastosporella Blastosporella zonata
6503105 6503105 PRJEB58983_P_NODE_23186_length_273_cov_2.865000_g22771_i0 PRJEB58983 23186 273 2.865 7.82145 Tilletiopsis washingtonensis 58919 Fungi Fungi 270 6.359999999999999e-68   NTclustered gi|1423580771|ref|XM_025742651.1| 58919 g22771 i0 84.982 80.018315018315 273 33 99 4 1 272 204 469 Tilletiopsis washingtonensis ribosomal protein S5 (FA09DRAFT_330559), mRNA blastn 21845 270 1 Eukaryota Opisthokonta Fungi Basidiomycota Exobasidiomycetes Entylomatales   Tilletiopsis Tilletiopsis washingtonensis
6503478 6503478 PRJEB58983_P_NODE_9226_length_410_cov_2.988131_g8812_i0 PRJEB58983 9226 410 2.988131 12.2513371 Sporisorium graminicola 280036 Fungi Fungi 355 2.68e-93   NTclustered gi|1701857377|ref|XM_029886443.1| 280036 g8812 i0 83.208 95.1780487804878 399 56 96 7 16 410 583 974 Sporisorium graminicola uncharacterized protein (EX895_005851), partial mRNA blastn 39023 355 1 Eukaryota Opisthokonta Fungi Basidiomycota Ustilaginomycetes Ustilaginales Ustilaginaceae Sporisorium Sporisorium graminicola
7777245 7777245 PRJEB58983_P_NODE_18887_length_297_cov_1.392857_g18472_i0 PRJEB58983 18887 297 1.392857 4.13678529 Cystobasidium minutum MCA 421 29899 Fungi Fungi 160 2.2699999999999993e-46   NR XP_066821183.1 1397322 g18472 i0 75.8 9 99 24 100 0 1 297 10 108 XP_066821183.1 40S ribosomal eS4 domain-containing protein [Cystobasidium minutum MCA 4210] diamond 2673 160 1 Eukaryota Opisthokonta Fungi Basidiomycota Cystobasidiomycetes Cystobasidiales Cystobasidiaceae Cystobasidium Cystobasidium minutum
11603148 11603148 PRJEB58983_P_NODE_15370_length_326_cov_2.189723_g14955_i0 PRJEB58983 15370 326 2.189723 7.13849698 Rhodotorula toruloides 5286 Fungi Fungi 196 1.34e-45   NTclustered gi|1022845413|ref|XM_016420738.1| 1130832 g14955 i0 84.422 23.3466257668712 199 31 61 0 49 247 319 121 Rhodotorula toruloides NP11 S-adenosylmethionine synthetase (RHTO_07080), partial mRNA blastn 7611 196 1 Eukaryota Opisthokonta Fungi Basidiomycota Microbotryomycetes Sporidiobolales Sporidiobolaceae Rhodotorula Rhodotorula toruloides
12471088 12471088 PRJEB58983_P_NODE_24670_length_266_cov_5.015544_g24255_i0 PRJEB58983 24670 266 5.015544 13.34134704 Fungi 4751 Fungi Fungi 233 8.089999999999999e-57   NTclustered gi|1393545135|ref|NG_058609.1| 112013 g24255 i0 83.019 84.3496240601504 265 37 99 6 1 265 276 20 Bannoa bischofiae JCM 10338 28S rRNA gene, partial sequence; from TYPE material blastn 22437 235 0.991489361702128 Eukaryota Opisthokonta Fungi Basidiomycota Cystobasidiomycetes Erythrobasidiales Erythrobasidiaceae Bannoa Bannoa bischofiae
12878431 12878431 PRJEB58983_P_NODE_20231_length_288_cov_39.069767_g19816_i0 PRJEB58983 20231 288 39.069767 112.52092896 uncultured Basidiomycota 175244 Fungi Fungi 193 1.5e-44   NTclustered gi|2259036595|emb|LR817459.1| 175244 g19816 i0 99.065 38.0798611111111 107 1 37 0 177 283 116 10 uncultured Basidiomycota genomic DNA sequence contains ITS2 blastn 10967 193 1 Eukaryota Opisthokonta Fungi Basidiomycota         uncultured Basidiomycota
16701541 16701541 PRJEB58983_P_NODE_21034_length_284_cov_2.194313_g20619_i0 PRJEB58983 21034 284 2.194313 6.23184892 Phanerochaete carnosa 231932 Fungi Fungi 122 1.9699999999999998e-23   NTclustered gi|599378500|ref|XM_007396510.1| 650164 g20619 i0 79.775 4.6830985915493 178 29 62 6 1 176 329 157 Phanerochaete carnosa HHB-10118-sp uncharacterized protein (PHACADRAFT_257335), mRNA blastn 1330 122 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Polyporales Phanerochaetaceae Phanerochaete Phanerochaete carnosa
27121333 27121333 PRJEB58983_P_NODE_1642_length_991_cov_3.168845_g1321_i0 PRJEB58983 1642 991 3.168845 31.40325395 Eukaryota 2759 Fungi Fungi 309 7.750000000000001e-100   NR KAI8461260.1 170000 g1321 i0 55.2 5.92431886982846 279 119 83.6 3 2 829 60 335 KAI8461260.1 ribosomal protein L4 domain-containing protein [Phakopsora pachyrhizi] diamond 5871 309 1 Eukaryota Opisthokonta Fungi Basidiomycota Pucciniomycetes Pucciniales Phakopsoraceae Phakopsora Phakopsora pachyrhizi
27539253 27539253 PRJEB58983_P_NODE_33944_length_232_cov_2.446541_g33529_i0 PRJEB58983 33944 232 2.446541 5.67597512 Calocera viscosa TUFC12733 1330018 Fungi Fungi 47.8 4.16e-4   NR KZO92105.1 1330018 g33529 i0 65.7 0.452586206896552 35 12 45.3 0 232 128 66 100 KZO92105.1 glutathione S-transferase C-terminal-like protein [Calocera viscosa TUFC12733] diamond 105 47.8 1 Eukaryota Opisthokonta Fungi Basidiomycota Dacrymycetes Dacrymycetales Dacrymycetaceae Calocera Calocera viscosa
27854870 27854870 PRJEB58983_P_NODE_33185_length_237_cov_2.652439_g32770_i0 PRJEB58983 33185 237 2.652439 6.28628043 Pholiota conissans 109636 Fungi Fungi 44.3 0.00991   NR KAF9484961.1 109636 g32770 i0 44.6 1.20253164556962 56 28 70.9 1 197 30 349 401 KAF9484961.1 growth factor receptor domain-containing protein [Pholiota conissans] diamond 285 44.3 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Agaricales Strophariaceae Pholiota Pholiota conissans
28170642 28170642 PRJEB58983_P_NODE_33686_length_234_cov_2.111801_g33271_i0 PRJEB58983 33686 234 2.111801 4.94161434 Puccinia sorghi 27349 Fungi Fungi 67 6.94e-11   NR KNZ45269.1 27349 g33271 i0 45.2 1.91025641025641 73 39 92.3 1 216 1 38 110 KNZ45269.1 ribosomal protein S5 [Puccinia sorghi] diamond 447 67 1 Eukaryota Opisthokonta Fungi Basidiomycota Pucciniomycetes Pucciniales Pucciniaceae Puccinia Puccinia sorghi
28202024 28202024 PRJEB58983_P_NODE_9606_length_402_cov_4.854103_g9192_i0 PRJEB58983 9606 402 4.854103 19.51349406 Tulasnella sp. 417 2600225 Fungi Fungi 117 7.579999999999999e-31   NR KAG8920536.1 2600225 g9192 i0 51.2 0.932835820895522 125 57 90.3 1 400 38 11 135 KAG8920536.1 ribosomal protein S24A [Tulasnella sp. 417] diamond 375 117 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Cantharellales Tulasnellaceae Tulasnella Tulasnella sp. 417
28511209 28511209 PRJEB58983_P_NODE_5167_length_540_cov_2.687366_g4754_i0 PRJEB58983 5167 540 2.687366 14.5117764 Cystobasidiomycetes 432005 Fungi Fungi 132 2.59e-33   NR XP_066819630.1 1397322 g4754 i0 59.5 6.42222222222222 116 46 63.9 1 537 193 218 333 XP_066819630.1 60S ribosomal protein uL4 [Cystobasidium minutum MCA 4210] diamond 3468 132 1 Eukaryota Opisthokonta Fungi Basidiomycota Cystobasidiomycetes Cystobasidiales Cystobasidiaceae Cystobasidium Cystobasidium minutum
29118079 29118079 PRJEB58983_P_NODE_26409_length_259_cov_1.258065_g25994_i0 PRJEB58983 26409 259 1.258065 3.25838835 Moesziomyces antarcticus 84753 Fungi Fungi 46.6 0.00206   NR XP_014654951.1 84753 g25994 i0 43.1 0.752895752895753 65 32 71.8 2 217 32 217 279 XP_014654951.1 WD40 repeat-like protein [Moesziomyces antarcticus] diamond 195 46.6 1 Eukaryota Opisthokonta Fungi Basidiomycota Ustilaginomycetes Ustilaginales Ustilaginaceae Moesziomyces Moesziomyces antarcticus
29395277 29395277 PRJEB58983_P_NODE_24589_length_267_cov_1.515464_g24174_i0 PRJEB58983 24589 267 1.515464 4.04628888 Fungi 4751 Fungi Fungi 112 3.78e-30   NR XP_017991365.1 77020 g24174 i0 67.1 10.5842696629213 73 24 82 0 1 219 32 104 XP_017991365.1 60s ribosomal protein l33-a-like protein [Malassezia pachydermatis] diamond 2826 112 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia pachydermatis
30058233 30058233 PRJEB58983_P_NODE_22351_length_277_cov_2.779412_g21936_i0 PRJEB58983 22351 277 2.779412 7.69897124 Eukaryota 2759 Fungi Fungi 66.2 1.43e-10   NR XP_062627379.1 143232 g21936 i0 43.8 14.4801444043321 89 48 96.4 2 272 6 3 89 XP_062627379.1 40S ribosomal protein S1 [Vanrija pseudolonga] diamond 4011 66.2 1 Eukaryota Opisthokonta Fungi Basidiomycota Tremellomycetes Trichosporonales Trichosporonaceae Vanrija Vanrija pseudolonga
30785092 30785092 PRJEB58983_P_NODE_18034_length_303_cov_2.721739_g17619_i0 PRJEB58983 18034 303 2.721739 8.24686917 Agaricales 5338 Fungi Fungi 137 7.599999999999999e-38   NR TFK43447.1 68775 g17619 i0 70.1 14.1782178217822 97 25 96 2 4 294 61 153 TFK43447.1 ribosomal protein L6e-domain-containing protein [Crucibulum laeve] diamond 4296 138 0.992753623188406 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Agaricales Nidulariaceae Crucibulum Crucibulum laeve
30886694 30886694 PRJEB58983_P_NODE_32714_length_240_cov_3.556886_g32299_i0 PRJEB58983 32714 240 3.556886 8.5365264 Meira miltonrushii 1280837 Fungi Fungi 129 1.26e-32   NR XP_025356523.1 1280837 g32299 i0 80.8 0.975 78 15 97.5 0 5 238 1473 1550 XP_025356523.1 uncharacterized protein FA14DRAFT_155626 [Meira miltonrushii] diamond 234 129 1 Eukaryota Opisthokonta Fungi Basidiomycota Exobasidiomycetes Exobasidiales Brachybasidiaceae Meira Meira miltonrushii
31487529 31487529 PRJEB58983_P_NODE_28276_length_252_cov_0.871508_g27861_i0 PRJEB58983 28276 252 0.871508 2.19620016 Crepidotus variabilis 179855 Fungi Fungi 54.7 2.59e-6   NR KAF9523599.1 179855 g27861 i0 38.3 5.69047619047619 81 46 91.7 1 251 21 1012 1092 KAF9523599.1 hypothetical protein CPB83DRAFT_910537 [Crepidotus variabilis] diamond 1434 54.7 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Agaricales Crepidotaceae Crepidotus Crepidotus variabilis
31891688 31891688 PRJEB58983_P_NODE_13317_length_347_cov_1.708029_g12902_i0 PRJEB58983 13317 347 1.708029 5.92686063 Agaricomycetes 155619 Fungi Fungi 68.6 2.13e-12   NR KIM34804.1 76867 g12902 i0 78 7.86743515850144 41 9 35.4 0 1 123 47 87 KIM34804.1 hypothetical protein M413DRAFT_391468 [Hebeloma cylindrosporum] diamond 2730 68.9 0.995645863570392 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Agaricales Hymenogastraceae Hebeloma Hebeloma cylindrosporum
32404839 32404839 PRJEB58983_P_NODE_16279_length_317_cov_4.725410_g15864_i0 PRJEB58983 16279 317 4.72541 14.9795497 Tulasnella sp. 417 2600225 Fungi Fungi 84.3 2.79e-18   NR KAG8920536.1 2600225 g15864 i0 47.7 0.832807570977918 88 46 83.3 0 13 276 40 127 KAG8920536.1 ribosomal protein S24A [Tulasnella sp. 417] diamond 264 84.3 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Cantharellales Tulasnellaceae Tulasnella Tulasnella sp. 417

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;