RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB58983", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJEB58983 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5227295 5227295 PRJEB58983_P_NODE_15905_length_321_cov_2.016129_g15490_i0 PRJEB58983 15905 321 2.016129 6.47177409 Rubrivirga sp. IMCC43871 3391575 Bacteria Bacteria 366 9.47e-97   NTclustered gi|2890853429|gb|CP177355.1| 3391575 g15490 i0 87.5 178.579439252336 320 37 99 3 4 320 807006 806687 Rubrivirga sp. IMCC43871 chromosome, complete genome blastn 57324 366 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC43871
14153343 14153343 PRJEB58983_P_NODE_25132_length_264_cov_3.057592_g24717_i0 PRJEB58983 25132 264 3.057592 8.07204288 Rubrivirga sp. IMCC43871 3391575 Bacteria Bacteria 353 5.9e-93   NTclustered gi|2890853429|gb|CP177355.1| 3391575 g24717 i0 90.943 588.265151515152 265 21 99 3 2 264 806728 806465 Rubrivirga sp. IMCC43871 chromosome, complete genome blastn 155302 353 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC43871
28574258 28574258 PRJEB58983_P_NODE_16907_length_312_cov_3.401674_g16492_i0 PRJEB58983 16907 312 3.401674 10.61322288 Pseudomonadati 3379134 Bacteria Bacteria 43.5 0.0421   NR WP_103020132.1 1803181 g16492 i0 51.2 1.26923076923077 43 18 38.5 1 146 27 199 241 WP_103020132.1 saccharopine dehydrogenase family protein [Salinibacter altiplanensis] diamond 396 43.5 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Salinibacteraceae Salinibacter Salinibacter altiplanensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;