RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB58983", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJEB58983 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11603511 11603511 PRJEB58983_P_NODE_31950_length_243_cov_1.335294_g31535_i0 PRJEB58983 31950 243 1.335294 3.24476442 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 331 2.51e-86   NTclustered gi|2874253755|emb|OY969695.1| 412054 g31535 i0 91.358 117.40329218107 243 20 100 1 1 243 342445 342686 MAG: uncultured Gemmatimonadales bacterium isolate MFD04967.bin.1.34 genome assembly, chromosome: 1 blastn 28529 331 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
30255080 30255080 PRJEB58983_P_NODE_34112_length_231_cov_2.196203_g33697_i0 PRJEB58983 34112 231 2.196203 5.07322893 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 42.4 0.0428   NR HKO15661.1 2026741 g33697 i0 39.6 0.688311688311688 53 32 68.8 0 178 20 439 491 HKO15661.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 159 42.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31069680 31069680 PRJEB58983_P_NODE_20895_length_285_cov_1.466981_g20480_i0 PRJEB58983 20895 285 1.466981 4.18089585 Pseudomonadati 3379134 Bacteria Bacteria 55.1 2.02e-6   NR MCY4351975.1 2026742 g20480 i0 38.7 4.89473684210526 93 44 91.6 3 18 278 61 146 MCY4351975.1 hypothetical protein [Gemmatimonadota bacterium] diamond 1395 55.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;