RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB58983", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Altimarinota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 4 ✖

tax_clade 1

  • Bacteria candidate phyla · 4 ✖

bioproject 1

  • PRJEB58983 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5227604 5227604 PRJEB58983_P_NODE_30765_length_246_cov_0.878613_g30350_i0 PRJEB58983 30765 246 0.878613 2.16138798 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 149 3.3799999999999987e-41   NR MDP2103732.1 2044595 g30350 i0 96.2 8.75609756097561 79 3 96.3 0 2 238 91 169 MDP2103732.1 cell division protein FtsZ [Candidatus Altimarinota bacterium] diamond 2154 149 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
26780531 26780531 PRJEB58983_P_NODE_28881_length_250_cov_1.717514_g28466_i0 PRJEB58983 28881 250 1.717514 4.293785 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 142 7.72e-39   NR MBX9809412.1 2044595 g28466 i0 80.7 0.996 83 16 99.6 0 250 2 31 113 MBX9809412.1 class I SAM-dependent RNA methyltransferase [Candidatus Altimarinota bacterium] diamond 249 142 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
28170635 28170635 PRJEB58983_P_NODE_29906_length_248_cov_0.891429_g29491_i0 PRJEB58983 29906 248 0.891429 2.21074392 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 145 1.0099999999999999e-38   NR MBP9812536.1 2044595 g29491 i0 87.8 2.96370967741935 82 10 99.2 0 247 2 38 119 MBP9812536.1 aspartate--tRNA ligase [Candidatus Altimarinota bacterium] diamond 735 145 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
32310147 32310147 PRJEB58983_P_NODE_31659_length_244_cov_0.883041_g31244_i0 PRJEB58983 31659 244 0.883041 2.15462004 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 112 5.2e-30   NR MBX9809703.1 2044595 g31244 i0 96.3 1.99180327868852 81 2 99.6 1 244 2 12 91 MBX9809703.1 50S ribosomal protein L7/L12 [Candidatus Altimarinota bacterium] diamond 486 112 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;