RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB58983", tax_clade = "Apusozoa" and tax_superkingdom = "Eukaryota"

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analysis 2

tax_superkingdom 1

  • Eukaryota · 3 ✖

tax_clade 1

  • Apusozoa · 3 ✖

bioproject 1

  • PRJEB58983 · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
125043 125043 PRJEB58983_P_NODE_32261_length_242_cov_1.798817_g31846_i0 PRJEB58983 32261 242 1.798817 4.35313714 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 129 9e-35   NR XP_013759145.1 461836 g31846 i0 73.8 31.7355371900826 80 21 99.2 0 3 242 16 95 XP_013759145.1 40S ribosomal protein S4 [Thecamonas trahens ATCC 50062] diamond 7680 130 0.992307692307692 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
7777581 7777581 PRJEB58983_P_NODE_34807_length_224_cov_5.986755_g34392_i0 PRJEB58983 34807 224 5.986755 13.4103312 Catacumbia lutetiensis 2925415 Root_unresolved Root_unresolved 158 4.1e-34   NTclustered gi|2206682166|gb|OM966639.1| 2925415 g34392 i0 89.516 49.2232142857143 124 13 55 0 59 182 5178 5301 Catacumbia lutetiensis strain ORSAYFEB19APU2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 11026 158 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Catacumbia Catacumbia lutetiensis
28423411 28423411 PRJEB58983_P_NODE_28546_length_251_cov_1.629213_g28131_i0 PRJEB58983 28546 251 1.629213 4.08932463 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 89.7 1.2e-18   NR XP_013761457.1 461836 g28131 i0 53 0.99203187250996006 83 37 98 2 3 248 591 672 XP_013761457.1 uncharacterized protein AMSG_01959 [Thecamonas trahens ATCC 50062] diamond 249 89.7 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;