RNAquarium Metadata Server
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contig_metadata

11 rows where bioproject = "PRJEB58983", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 11 ✖

tax_clade 1

  • Amoebozoa · 11 ✖

bioproject 1

  • PRJEB58983 · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2674964 2674964 PRJEB58983_P_NODE_24083_length_269_cov_2.096939_g23668_i0 PRJEB58983 24083 269 2.096939 5.64076591 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 357 4.66e-94   NTclustered gi|659103926|gb|KJ569726.1| 1512276 g23668 i0 90.357 44.0371747211896 280 15 100 8 1 269 1622 1900 Cochliopodium kieliense clone 9605 18S ribosomal RNA gene, partial sequence blastn 11846 357 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
6503462 6503462 PRJEB58983_P_NODE_8426_length_427_cov_4.734463_g8012_i0 PRJEB58983 8426 427 4.734463 20.21615701 Paravannella minima 1443144 Discosea other_Eukaryota 108 8.66e-19   NTclustered gi|1583105587|ref|NC_040955.1| 1443144 g8012 i0 94.286 2.49648711943794 70 4 16 0 43 112 2789 2858 Paravannella minima mitochondrion, complete genome blastn 1066 108 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Paravannella Paravannella minima
11603404 11603404 PRJEB58983_P_NODE_27730_length_253_cov_2.155556_g27315_i0 PRJEB58983 27730 253 2.155556 5.45355668 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 130 1.65e-33   NR XP_004344078.1 1257118 g27315 i0 80.3 0.901185770750988 76 15 90.1 0 251 24 402 477 XP_004344078.1 Sadenosyl-L-homocysteine hydrolase, putative [Acanthamoeba castellanii str. Neff] diamond 228 130 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
16701758 16701758 PRJEB58983_P_NODE_32894_length_239_cov_2.716867_g32479_i0 PRJEB58983 32894 239 2.716867 6.49331213 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 259 1.18e-64   NTclustered gi|659103923|gb|KJ569725.1| 1512276 g32479 i0 92.021 23.4267782426778 188 10 78 4 1 186 695 879 Cochliopodium kieliense clone 9601 18S ribosomal RNA gene, partial sequence blastn 5599 259 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
17976281 17976281 PRJEB58983_P_NODE_13435_length_345_cov_8.525735_g13020_i0 PRJEB58983 13435 345 8.525735 29.41378575 Thecamoeba quadrilineata 343530 Discosea other_Eukaryota 233 1.09e-56   NTclustered gi|2386968834|ref|NC_068853.1| 343530 g13020 i0 83.658 0.744927536231884 257 32 74 10 86 339 10317 10566 Thecamoeba quadrilineata mitochondrion, complete genome blastn 257 233 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Thecamoeba Thecamoeba quadrilineata
20525661 20525661 PRJEB58983_P_NODE_15457_length_325_cov_2.575397_g15042_i0 PRJEB58983 15457 325 2.575397 8.37004025 Thecamoeba quadrilineata 343530 Discosea other_Eukaryota 287 7.69e-73   NTclustered gi|2386968834|ref|NC_068853.1| 343530 g15042 i0 82.875 5.88 327 49 99 5 1 323 10197 9874 Thecamoeba quadrilineata mitochondrion, complete genome blastn 1911 287 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Thecamoeba Thecamoeba quadrilineata
23076722 23076722 PRJEB58983_P_NODE_14239_length_337_cov_1.659091_g13824_i0 PRJEB58983 14239 337 1.659091 5.59113667 Acanthamoeba healyi 65661 Discosea other_Eukaryota 155 1.04e-43   NR AAL67857.1 65661 g13824 i0 68.8 2.97329376854599 112 35 99.7 0 2 337 195 306 AAL67857.1 cysteine proteinase [Acanthamoeba healyi] diamond 1002 155 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba healyi
23077188 23077188 PRJEB58983_P_NODE_5119_length_542_cov_7.985075_g4707_i0 PRJEB58983 5119 542 7.985075 43.2791065 Thecamoeba quadrilineata 343530 Discosea other_Eukaryota 117 1.86e-21   NTclustered gi|2386968834|ref|NC_068853.1| 343530 g4707 i0 82.734 14.5350553505535 139 16 25 4 11 147 9848 9716 Thecamoeba quadrilineata mitochondrion, complete genome blastn 7878 117 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Thecamoeba Thecamoeba quadrilineata
26590123 26590123 PRJEB58983_P_NODE_31101_length_245_cov_0.906977_g30686_i0 PRJEB58983 31101 245 0.906977 2.22209365 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 87 9.47e-18   NR XP_004367810.1 1257118 g30686 i0 53.1 0.991836734693878 81 38 99.2 0 245 3 299 379 XP_004367810.1 RhoGEF domain containing protein [Acanthamoeba castellanii str. Neff] diamond 243 87 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27065138 27065138 PRJEB58983_P_NODE_4742_length_562_cov_1.928425_g4332_i0 PRJEB58983 4742 562 1.928425 10.8377485 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 47.8 0.00128   NR XP_004351526.1 1257118 g4332 i0 46.9 0.261565836298932 49 26 26.2 0 509 363 26 74 XP_004351526.1 selT/selW/selH selenoprotein domain containing protein [Acanthamoeba castellanii str. Neff] diamond 147 47.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27823507 27823507 PRJEB58983_P_NODE_27964_length_253_cov_0.866667_g27549_i0 PRJEB58983 27964 253 0.866667 2.19266751 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 48.9 2.96e-4   NR XP_004367915.1 1257118 g27549 i0 37.2 1.0197628458498 86 50 98.4 3 5 253 20 104 XP_004367915.1 leucine rich repeat domain containing protein [Acanthamoeba castellanii str. Neff] diamond 258 48.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;