RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

26 rows where bioproject = "PRJEB58983" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 3

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 26 ✖

bioproject 1

  • PRJEB58983 · 26 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2674964 2674964 PRJEB58983_P_NODE_24083_length_269_cov_2.096939_g23668_i0 PRJEB58983 24083 269 2.096939 5.64076591 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 357 4.66e-94   NTclustered gi|659103926|gb|KJ569726.1| 1512276 g23668 i0 90.357 44.0371747211896 280 15 100 8 1 269 1622 1900 Cochliopodium kieliense clone 9605 18S ribosomal RNA gene, partial sequence blastn 11846 357 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
6503014 6503014 PRJEB58983_P_NODE_18746_length_298_cov_1.515556_g18331_i0 PRJEB58983 18746 298 1.515556 4.51635688 Soliformovum irregulare 435424 Evosea other_Eukaryota 479 1.0699999999999999e-130   NTclustered gi|146448863|gb|EF513199.1| 435424 g18331 i0 95.638 91.503355704698 298 13 100 0 1 298 1046 749 Soliformovum irregulare elongation factor 1A (EF1A) gene, partial cds blastn 27268 479 1 Eukaryota Amoebozoa   Evosea Variosea Fractovitellida Soliformoviidae Soliformovum Soliformovum irregulare
6503462 6503462 PRJEB58983_P_NODE_8426_length_427_cov_4.734463_g8012_i0 PRJEB58983 8426 427 4.734463 20.21615701 Paravannella minima 1443144 Discosea other_Eukaryota 108 8.66e-19   NTclustered gi|1583105587|ref|NC_040955.1| 1443144 g8012 i0 94.286 2.49648711943794 70 4 16 0 43 112 2789 2858 Paravannella minima mitochondrion, complete genome blastn 1066 108 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Paravannella Paravannella minima
11603404 11603404 PRJEB58983_P_NODE_27730_length_253_cov_2.155556_g27315_i0 PRJEB58983 27730 253 2.155556 5.45355668 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 130 1.65e-33   NR XP_004344078.1 1257118 g27315 i0 80.3 0.901185770750988 76 15 90.1 0 251 24 402 477 XP_004344078.1 Sadenosyl-L-homocysteine hydrolase, putative [Acanthamoeba castellanii str. Neff] diamond 228 130 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
12878668 12878668 PRJEB58983_P_NODE_30771_length_246_cov_0.872832_g30356_i0 PRJEB58983 30771 246 0.872832 2.14716672 Acytostelium subglobosum 361139 Evosea other_Eukaryota 148 2.75e-31   NTclustered gi|831766831|ref|XM_012896462.1| 1410327 g30356 i0 89.076 4.52845528455285 119 13 48 0 123 241 1 119 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 1114 148 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
16701381 16701381 PRJEB58983_P_NODE_13294_length_347_cov_3.091241_g12879_i0 PRJEB58983 13294 347 3.091241 10.72660627 Acytostelium leptosomum 133408 Evosea other_Eukaryota 263 1.39e-65   NTclustered gi|169930332|gb|EU360789.1| 133408 g12879 i0 81.994 81.5706051873199 311 54 89 2 1 310 176 485 Acytostelium leptosomum elongation factor 1 alpha gene, partial cds blastn 28305 263 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium leptosomum
16701758 16701758 PRJEB58983_P_NODE_32894_length_239_cov_2.716867_g32479_i0 PRJEB58983 32894 239 2.716867 6.49331213 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 259 1.18e-64   NTclustered gi|659103923|gb|KJ569725.1| 1512276 g32479 i0 92.021 23.4267782426778 188 10 78 4 1 186 695 879 Cochliopodium kieliense clone 9601 18S ribosomal RNA gene, partial sequence blastn 5599 259 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
17976281 17976281 PRJEB58983_P_NODE_13435_length_345_cov_8.525735_g13020_i0 PRJEB58983 13435 345 8.525735 29.41378575 Thecamoeba quadrilineata 343530 Discosea other_Eukaryota 233 1.09e-56   NTclustered gi|2386968834|ref|NC_068853.1| 343530 g13020 i0 83.658 0.744927536231884 257 32 74 10 86 339 10317 10566 Thecamoeba quadrilineata mitochondrion, complete genome blastn 257 233 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Thecamoeba Thecamoeba quadrilineata
20118602 20118602 PRJEB58983_P_NODE_18656_length_298_cov_4.448889_g18241_i0 PRJEB58983 18656 298 4.448889 13.25768922 Chaos 160821 Tubulinea other_Eukaryota 387 6.68e-103   NTclustered gi|17902587|emb|AJ314606.1| 160822 g18241 i0 90.033 97.3926174496644 301 26 100 4 1 298 1251 952 Chaos nobile partial 16S rRNA gene, strain CCAP 1511/2 blastn 29023 387 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Chaos Chaos nobile
20525661 20525661 PRJEB58983_P_NODE_15457_length_325_cov_2.575397_g15042_i0 PRJEB58983 15457 325 2.575397 8.37004025 Thecamoeba quadrilineata 343530 Discosea other_Eukaryota 287 7.69e-73   NTclustered gi|2386968834|ref|NC_068853.1| 343530 g15042 i0 82.875 5.88 327 49 99 5 1 323 10197 9874 Thecamoeba quadrilineata mitochondrion, complete genome blastn 1911 287 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Thecamoeba Thecamoeba quadrilineata
21801594 21801594 PRJEB58983_P_NODE_22178_length_278_cov_2.282927_g21763_i0 PRJEB58983 22178 278 2.282927 6.34653706 Heterostelium pallidum 13642 Evosea other_Eukaryota 291 4.98e-74   NTclustered gi|160688721|gb|EU275726.1| 13642 g21763 i0 85.714 98.1151079136691 280 34 99 6 2 278 9499 9223 Polysphondylium pallidum strain PN500 mitochondrion, complete genome blastn 27276 291 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium pallidum
23076722 23076722 PRJEB58983_P_NODE_14239_length_337_cov_1.659091_g13824_i0 PRJEB58983 14239 337 1.659091 5.59113667 Acanthamoeba healyi 65661 Discosea other_Eukaryota 155 1.04e-43   NR AAL67857.1 65661 g13824 i0 68.8 2.97329376854599 112 35 99.7 0 2 337 195 306 AAL67857.1 cysteine proteinase [Acanthamoeba healyi] diamond 1002 155 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba healyi
23077177 23077177 PRJEB58983_P_NODE_4559_length_572_cov_66.875752_g4150_i0 PRJEB58983 4559 572 66.875752 382.52930144 uncultured Soliformovum 2510342 Evosea other_Eukaryota 568 4.5299999999999986e-157   NTclustered gi|1564356923|gb|MK443523.1| 2510342 g4150 i0 91.932 42.6223776223776 409 28 71 3 165 572 425 21 Uncultured Soliformovum clone OTUA345 small subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 24380 568 1 Eukaryota Amoebozoa   Evosea Variosea Protosteliida Protosteliaceae   uncultured Soliformovum
23077188 23077188 PRJEB58983_P_NODE_5119_length_542_cov_7.985075_g4707_i0 PRJEB58983 5119 542 7.985075 43.2791065 Thecamoeba quadrilineata 343530 Discosea other_Eukaryota 117 1.86e-21   NTclustered gi|2386968834|ref|NC_068853.1| 343530 g4707 i0 82.734 14.5350553505535 139 16 25 4 11 147 9848 9716 Thecamoeba quadrilineata mitochondrion, complete genome blastn 7878 117 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Thecamoeba Thecamoeba quadrilineata
26590123 26590123 PRJEB58983_P_NODE_31101_length_245_cov_0.906977_g30686_i0 PRJEB58983 31101 245 0.906977 2.22209365 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 87 9.47e-18   NR XP_004367810.1 1257118 g30686 i0 53.1 0.991836734693878 81 38 99.2 0 245 3 299 379 XP_004367810.1 RhoGEF domain containing protein [Acanthamoeba castellanii str. Neff] diamond 243 87 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27065138 27065138 PRJEB58983_P_NODE_4742_length_562_cov_1.928425_g4332_i0 PRJEB58983 4742 562 1.928425 10.8377485 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 47.8 0.00128   NR XP_004351526.1 1257118 g4332 i0 46.9 0.261565836298932 49 26 26.2 0 509 363 26 74 XP_004351526.1 selT/selW/selH selenoprotein domain containing protein [Acanthamoeba castellanii str. Neff] diamond 147 47.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27127996 27127996 PRJEB58983_P_NODE_28282_length_252_cov_0.871508_g27867_i0 PRJEB58983 28282 252 0.871508 2.19620016 Dictyostelium purpureum 5786 Evosea other_Eukaryota 107 5.07e-26   NR XP_003293708.1 5786 g27867 i0 63.3 0.94047619047619 79 28 92.9 1 248 15 196 274 XP_003293708.1 uncharacterized protein DICPUDRAFT_84250 [Dictyostelium purpureum] diamond 237 107 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
27697406 27697406 PRJEB58983_P_NODE_22584_length_276_cov_2.216749_g22169_i0 PRJEB58983 22584 276 2.216749 6.11822724 Heterostelium album PN5 2086695 Evosea other_Eukaryota 90.9 4.35e-19   NR XP_020430246.1 670386 g22169 i0 60.9 1.54347826086957 64 25 69.6 0 209 18 37 100 XP_020430246.1 isovaleryl-CoA dehydrogenase [Heterostelium album PN500] diamond 426 90.9 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
27823507 27823507 PRJEB58983_P_NODE_27964_length_253_cov_0.866667_g27549_i0 PRJEB58983 27964 253 0.866667 2.19266751 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 48.9 2.96e-4   NR XP_004367915.1 1257118 g27549 i0 37.2 1.0197628458498 86 50 98.4 3 5 253 20 104 XP_004367915.1 leucine rich repeat domain containing protein [Acanthamoeba castellanii str. Neff] diamond 258 48.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28139338 28139338 PRJEB58983_P_NODE_30725_length_246_cov_0.901734_g30310_i0 PRJEB58983 30725 246 0.901734 2.21826564 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 59.3 5.2100000000000003e-08   NR PRP88790.1 1890364 g30310 i0 38.3 0.98780487804878 81 41 98.8 1 2 244 295 366 PRP88790.1 translation factor [Planoprotostelium fungivorum] diamond 243 59.3 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
28833655 28833655 PRJEB58983_P_NODE_21108_length_284_cov_1.379147_g20693_i0 PRJEB58983 21108 284 1.379147 3.91677748 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 130 8.94e-36   NR PRP86688.1 1890364 g20693 i0 67.4 1.88028169014085 89 29 94 0 267 1 83 171 PRP86688.1 hypothetical protein PROFUN_05167 [Planoprotostelium fungivorum] diamond 534 130 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
31202182 31202182 PRJEB58983_P_NODE_31215_length_245_cov_0.877907_g30800_i0 PRJEB58983 31215 245 0.877907 2.15087215 Cavenderia fasciculata 261658 Evosea other_Eukaryota 82.8 3e-16   NR XP_004350707.1 261658 g30800 i0 54.9 0.869387755102041 71 32 86.9 0 241 29 629 699 XP_004350707.1 uncharacterized protein DFA_11760 [Cavenderia fasciculata] diamond 213 82.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
31297480 31297480 PRJEB58983_P_NODE_27915_length_253_cov_0.866667_g27500_i0 PRJEB58983 27915 253 0.866667 2.19266751 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 92.8 1e-19   NR PRP83916.1 1890364 g27500 i0 51.8 0.984189723320158 83 40 98.4 0 251 3 54 136 PRP83916.1 ubiquitin-like modifier activating enzyme 6 [Planoprotostelium fungivorum] diamond 249 92.8 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
31519061 31519061 PRJEB58983_P_NODE_30696_length_246_cov_0.901734_g30281_i0 PRJEB58983 30696 246 0.901734 2.21826564 Heterostelium album PN5 2086695 Evosea other_Eukaryota 52.4 1.56e-5   NR XP_020431653.1 670386 g30281 i0 57.9 0.463414634146341 38 15 46.3 1 246 133 465 501 XP_020431653.1 putative zinc transporter [Heterostelium album PN500] diamond 114 52.4 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
31582319 31582319 PRJEB58983_P_NODE_21596_length_281_cov_2.365385_g21181_i0 PRJEB58983 21596 281 2.365385 6.64673185 Acytostelium subglobosum LB1 1410327 Evosea other_Eukaryota 95.5 1.63e-20   NR XP_012752933.1 1410327 g21181 i0 51.6 0.99288256227758 93 44 99.3 1 279 1 50 141 XP_012752933.1 hypothetical protein SAMD00019534_070720 [Acytostelium subglobosum LB1] diamond 279 95.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
32056672 32056672 PRJEB58983_P_NODE_29898_length_248_cov_0.891429_g29483_i0 PRJEB58983 29898 248 0.891429 2.21074392 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 47.8 6.9e-4   NR PRP77243.1 1890364 g29483 i0 39.4 0.858870967741935 71 42 84.7 1 16 225 547 617 PRP77243.1 endoglucanase (endo-1,4-beta-glucanase) (cellulase) [Planoprotostelium fungivorum] diamond 213 47.8 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;