RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJEB56699" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 7 ✖

tax_clade 1

bioproject 1

  • PRJEB56699 · 7 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3542563 3542563 PRJEB56699_P_NODE_1303_length_516_cov_4.870637_g1109_i0 PRJEB56699 1303 516 4.870637 25.13248692 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 682 0   NTclustered gi|1837628855|gb|MN158348.1| 5909 g1109 i0 94.831 85.0833333333333 445 10 86 3 1 444 2605 3037 Tetrahymena rostrata strain TRAUS 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 43903 682 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena rostrata
14153012 14153012 PRJEB56699_P_NODE_1292_length_518_cov_4.494888_g1098_i0 PRJEB56699 1292 518 4.494888 23.28351984 Coleps hirtus 60000 SAR_Eukaryotes SAR_Eukaryotes 475 2.5399999999999993e-129   NTclustered gi|328684911|gb|HM122027.1| 394492 g1098 i0 94.481 12.8745173745174 308 17 59 0 93 400 521 214 Coleps hirtus hirtus isolate SNK09101903 macronuclear blastn 6669 475 1 Eukaryota Sar   Ciliophora Prostomatea Prorodontida Colepidae Coleps Coleps hirtus
16701320 16701320 PRJEB56699_P_NODE_4234_length_237_cov_2.187500_g4004_i0 PRJEB56699 4234 237 2.1875 5.184375 Euplotes vanleeuwenhoeki 2794224 SAR_Eukaryotes SAR_Eukaryotes 89.8 1.62e-13   NTclustered gi|2055401904|ref|NC_056101.1| 2794224 g4004 i0 86.585 33.4092827004219 82 10 35 1 3 84 4618 4698 Euplotes vanleeuwenhoeki strain KKR18 mitochondrion, complete genome blastn 7918 89.8 1 Eukaryota Sar   Ciliophora Spirotrichea Euplotida Euplotidae Euplotes Euplotes vanleeuwenhoeki
17569868 17569868 PRJEB56699_P_NODE_6074_length_176_cov_2.095238_g5844_i0 PRJEB56699 6074 176 2.095238 3.68761888 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 291 2.89e-74   NTclustered gi|114329811|ref|NC_008337.1| 5901 g5844 i0 96.591 23.1534090909091 176 4 100 2 1 176 32957 33130 Tetrahymena malaccensis mitochondrion, complete genome blastn 4075 291 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena malaccensis
21801341 21801341 PRJEB56699_P_NODE_1058_length_568_cov_5.280148_g882_i0 PRJEB56699 1058 568 5.280148 29.99124064 Coleps hirtus 60000 SAR_Eukaryotes SAR_Eukaryotes 989 0   NTclustered gi|2026535536|gb|MW929305.1| 60000 g882 i0 98.063 78.8045774647887 568 11 100 0 1 568 2775 2208 Coleps hirtus strain AG Berninger/Pickham Uni Salzburg small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 44761 989 1 Eukaryota Sar   Ciliophora Prostomatea Prorodontida Colepidae Coleps Coleps hirtus
21801342 21801342 PRJEB56699_P_NODE_2598_length_343_cov_2.041401_g2368_i0 PRJEB56699 2598 343 2.041401 7.00200543 Tetrahymena malaccensis 5901 SAR_Eukaryotes SAR_Eukaryotes 490 5.799999999999999e-134   NTclustered gi|114329811|ref|NC_008337.1| 5901 g2368 i0 94.136 77.6239067055394 324 16 94 2 14 334 33301 33624 Tetrahymena malaccensis mitochondrion, complete genome blastn 26625 490 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena malaccensis
23944345 23944345 PRJEB56699_P_NODE_4479_length_226_cov_2.558376_g4249_i0 PRJEB56699 4479 226 2.558376 5.78192976 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 180 8.84e-41   NTclustered gi|1268580094|gb|KY218574.1| 5898 g4249 i0 100 51.2389380530973 97 0 75 0 1 97 444 540 Tetrahymena furgasoni isolate 20749-1 small subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 11580 180 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena furgasoni

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;