RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB56699" and tax_phylum = "Candidatus Peregrinibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Peregrinibacteriota · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB56699 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9051826 9051826 PRJEB56699_P_NODE_1688_length_445_cov_2.899038_g1474_i0 PRJEB56699 1688 445 2.899038 12.9007191 Candidatus Peribacteria bacterium 2053688 Bacteria Bacteria 327 6.390000000000001e-85   NTclustered gi|2225492643|gb|CP082927.1| 2053688 g1474 i0 81.136 1.78426966292135 440 50 96 20 8 436 193883 194300 MAG: Candidatus Peribacteria bacterium isolate LakeFargette_0920_ALND_MAG_52_24 chromosome, complete genome blastn 794 327 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota Candidatus Peribacteria       Candidatus Peribacteria bacterium
12878210 12878210 PRJEB56699_P_NODE_831_length_645_cov_3.655844_g672_i0 PRJEB56699 831 645 3.655844 23.5801938 Candidatus Peribacteria bacterium 2053688 Bacteria Bacteria 477 8.929999999999997e-130   NTclustered gi|2225492643|gb|CP082927.1| 2053688 g672 i0 84.016 38.4651162790698 513 64 78 12 138 642 193772 193270 MAG: Candidatus Peribacteria bacterium isolate LakeFargette_0920_ALND_MAG_52_24 chromosome, complete genome blastn 24810 477 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota Candidatus Peribacteria       Candidatus Peribacteria bacterium
23076624 23076624 PRJEB56699_P_NODE_1439_length_488_cov_4.132898_g1239_i0 PRJEB56699 1439 488 4.132898 20.16854224 Candidatus Peribacter riflensis 1735162 Bacteria Bacteria 270 1.21e-67   NTclustered gi|946529367|gb|CP013062.1| 1735162 g1239 i0 85.992 48.469262295082 257 31 89 4 233 488 1195402 1195150 MAG: Candidatus Peribacter riflensis, complete genome blastn 23653 270 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota Candidatus Peribacteria Candidatus Peribacterales   Candidatus Peribacter Candidatus Peribacter riflensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;