RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB56699" and tax_kingdom = "Metazoa"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB56699 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6095165 6095165 PRJEB56699_P_NODE_5005_length_210_cov_1.834254_g4775_i0 PRJEB56699 5005 210 1.834254 3.8519334 Lumbricidae 6392 Annelida Annelida 165 2.27e-36   NTclustered gi|383088841|gb|JQ739968.1| 6396 g4775 i0 100 77.6380952380952 89 0 80 0 122 210 552 464 Eisenia fetida isolate H28 28S ribosomal RNA gene, partial sequence blastn 16304 165 1 Eukaryota Opisthokonta Metazoa Annelida Clitellata Crassiclitellata Lumbricidae Eisenia Eisenia fetida
9051831 9051831 PRJEB56699_P_NODE_5248_length_203_cov_2.103448_g5018_i0 PRJEB56699 5248 203 2.103448 4.26999944 Polypterus senegalus 55291 Chordata Chordata 180 7.78e-41   NTclustered gi|1993937637|ref|XM_039741126.1| 55291 g5018 i0 89.583 8.0935960591133 144 12 70 3 62 203 1173 1315 PREDICTED: Polypterus senegalus E3 SUMO-protein ligase ZBED1-like (LOC120518358), transcript variant X2, mRNA blastn 1643 180 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
27001715 27001715 PRJEB56699_P_NODE_5622_length_193_cov_2.189024_g5392_i0 PRJEB56699 5622 193 2.189024 4.22481632 Bufotes viridis 30338 Chordata Chordata 49.3 9.26e-5   NR CAK8629749.1 30338 g5392 i0 71.4 0.435233160621762 28 8 43.5 0 138 55 337 364 CAK8629749.1 Interleukin-1 receptor type 1 [Bufotes viridis] diamond 84 49.3 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;