RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB56699", tax_clade = "Embryophyta" and tax_phylum = "Streptophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Streptophyta · 3 ✖

tax_kingdom 1

tax_clade 1

  • Embryophyta · 3 ✖

bioproject 1

  • PRJEB56699 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8645173 8645173 PRJEB56699_P_NODE_6667_length_151_cov_1.934426_g6437_i0 PRJEB56699 6667 151 1.934426 2.92098326 Magnoliopsida 3398 Plants Plants 279 5.19e-71   NTclustered gi|2646016675|ref|XR_009883389.1| 3486 g6437 i0 100 100 151 0 100 0 1 151 1429 1579 PREDICTED: Humulus lupulus 18S ribosomal RNA (LOC133811861), rRNA blastn 15100 279 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Cannabaceae Humulus Humulus lupulus
28612684 28612684 PRJEB56699_P_NODE_287_length_1083_cov_4.704934_g177_i1 PRJEB56699 287 1083 4.704934 50.95443522 Shorea laevis 152420 Plants Plants 52.4 0.0016   NR GLT66639.1 152420 g177 i1 58.5 1 41 17 11.4 0 554 676 210 250 GLT66639.1 hypothetical protein SLA2020_389940 [Shorea laevis] diamond 1083 52.4 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Malvales Dipterocarpaceae Shorea Shorea laevis
29086412 29086412 PRJEB56699_P_NODE_248_length_1159_cov_4.507080_g177_i0 PRJEB56699 248 1159 4.50708 52.2370572 Shorea laevis 152420 Plants Plants 52.4 0.00181   NR GLT66639.1 152420 g177 i0 58.5 0.934426229508197 41 17 10.6 0 614 492 210 250 GLT66639.1 hypothetical protein SLA2020_389940 [Shorea laevis] diamond 1083 52.4 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Malvales Dipterocarpaceae Shorea Shorea laevis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;