RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJEB56699" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 7 ✖

bioproject 1

  • PRJEB56699 · 7 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4819984 4819984 PRJEB56699_P_NODE_4864_length_214_cov_1.572973_g4634_i0 PRJEB56699 4864 214 1.572973 3.36616222 Euglenaceae 1131320 Euglenozoa other_Eukaryota 89.8 1.44e-13   NTclustered gi|209362308|gb|AY359944.2| 150582 g4634 i0 77.707 5.92990654205607 157 28 73 4 1 157 2416 2565 Trachelomonas volvocinopsis strain SAG 1283-16 large subunit ribosomal RNA gene, partial sequence blastn 1269 89.8 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Trachelomonas Trachelomonas volvocinopsis
9051829 9051829 PRJEB56699_P_NODE_3528_length_275_cov_2.260163_g3298_i0 PRJEB56699 3528 275 2.260163 6.21544825 Monomorphina sp. KIJ-2012a 1215300 Euglenozoa other_Eukaryota 176 1.44e-39   NTclustered gi|397789340|gb|JN603846.1| 1215300 g3298 i0 82.439 5.10909090909091 205 32 73 3 63 263 1172 1376 Monomorphina sp. KIJ-2012a strain MI 18S small subunit ribosomal RNA gene, partial sequence blastn 1405 176 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Monomorphina Monomorphina sp. KIJ-2012a
10327645 10327645 PRJEB56699_S_NODE_29_length_291_cov_2.835878_g27_i0 PRJEB56699 29 291 2.835878 8.25240498 Peranema trichophorum 56466 Euglenozoa other_Eukaryota 527 3.67e-145   NTclustered gi|27461806|gb|AY130826.1| 56466 g27 i0 99.313 2.72508591065292 291 2 100 0 1 291 485 195 Peranema trichophorum voucher Carolina Biol. Supp. Co. (CBS) CE 13-1838 large subunit ribosomal RNA gene, partial sequence blastn 793 527 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemidae Peranema Peranema trichophorum
11195349 11195349 PRJEB56699_P_NODE_1129_length_552_cov_2.852772_g945_i0 PRJEB56699 1129 552 2.852772 15.74730144 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 62.1 9.03e-5   NTclustered gi|2031946985|emb|OD958550.1| 5763 g945 i0 100 5.77898550724638 33 0 6 0 122 154 4357 4325 Naegleria fowleri Karachi_NF001 strain blastn 3190 62.1 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
15426999 15426999 PRJEB56699_P_NODE_1253_length_527_cov_3.076305_g1062_i0 PRJEB56699 1253 527 3.076305 16.21212735 Naegleria australiensis 51634 Heterolobosea other_Eukaryota 968 0   NTclustered gi|2476253407|gb|OQ627480.1| 51634 g1062 i0 99.81 33.3833017077799 527 1 100 0 1 527 2864 2338 Naegleria australiensis strain PP397 rDNA-containing extrachromosomal element genomic sequence; small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence; and non-ribosomal sequence blastn 17593 968 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria australiensis
22668926 22668926 PRJEB56699_P_NODE_2038_length_398_cov_2.840108_g1812_i0 PRJEB56699 2038 398 2.840108 11.30362984 Naegleria 5761 Heterolobosea other_Eukaryota 62.1 6.33e-5   NTclustered gi|2031946985|emb|OD958550.1| 5763 g1812 i0 100 7.98492462311558 33 0 8 0 245 277 4325 4357 Naegleria fowleri Karachi_NF001 strain blastn 3178 62.1 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
22668931 22668931 PRJEB56699_P_NODE_5358_length_200_cov_2.543860_g5128_i0 PRJEB56699 5358 200 2.54386 5.08772 Trypanosoma 5690 Euglenozoa other_Eukaryota 243 9.61e-60   NTclustered gi|162233|gb|M63699.1|TRBRGS1 5693 g5128 i0 89.175 118.25 194 21 97 0 7 200 68 261 T.cruzi S3 ribosomal RNA gene blastn 23650 243 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma cruzi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;