RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB56027", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJEB56027 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13745410 13745410 PRJEB56027_P_NODE_32771_length_661_cov_1.154762_g30005_i0 PRJEB56027 32771 661 1.154762 7.63297682 Helicobacter 209 Bacteria Bacteria 1218 0   NTclustered gi|2157108461|dbj|AP025204.1| 213 g30005 i0 100 132.226928895613 659 0 99 0 1 659 128066 128724 Helicobacter cinaedi 94105 DNA, complete genome blastn 87402 1218 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter cinaedi
31708683 31708683 PRJEB56027_P_NODE_100377_length_268_cov_1.579487_g97568_i0 PRJEB56027 100377 268 1.579487 4.23302516 Helicobacter pylori 210 Bacteria Bacteria 40 0.0417   NR GAA8701437.1 210 g97568 i0 58.1 0.347014925373134 31 13 34.7 0 37 129 5 35 GAA8701437.1 hypothetical protein Kyoto145A_3300 [Helicobacter pylori] diamond 93 40 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;