RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB56027", tax_kingdom = "Pseudomonadati" and tax_phylum = "Abditibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Abditibacteriota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJEB56027 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28170611 28170611 PRJEB56027_P_NODE_136726_length_230_cov_2.579618_g133917_i0 PRJEB56027 136726 230 2.579618 5.9331214 Abditibacteriaceae bacterium 2800791 Bacteria Bacteria 110 4.24e-26   NR HEX8236746.1 2800791 g133917 i0 73.7 0.991304347826087 76 20 99.1 0 229 2 540 615 HEX8236746.1 threonine--tRNA ligase [Abditibacteriaceae bacterium] diamond 228 110 1 Bacteria   Pseudomonadati Abditibacteriota Abditibacteriia Abditibacteriales Abditibacteriaceae   Abditibacteriaceae bacterium
28991861 28991861 PRJEB56027_P_NODE_84448_length_291_cov_1.853211_g81639_i0 PRJEB56027 84448 291 1.853211 5.39284401 Abditibacterium utsteinense 1960156 Bacteria Bacteria 83.2 3.44e-16   NR WP_105483201.1 1960156 g81639 i0 49 1.03092783505155 100 42 99 4 289 2 79 173 WP_105483201.1 TlpA disulfide reductase family protein [Abditibacterium utsteinense] diamond 300 83.2 1 Bacteria   Pseudomonadati Abditibacteriota Abditibacteriia Abditibacteriales Abditibacteriaceae Abditibacterium Abditibacterium utsteinense

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;