RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB56027" and tax_clade = "Sar"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

bioproject 1

  • PRJEB56027 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6095084 6095084 PRJEB56027_P_NODE_106005_length_260_cov_5.625668_g103196_i0 PRJEB56027 106005 260 5.625668 14.6267368 Colpoda 5979 SAR_Eukaryotes SAR_Eukaryotes 481 2.55e-131   NTclustered gi|1802599796|gb|MT001205.1| 41631 g103196 i0 100 100.207692307692 260 0 100 0 1 260 30 289 Colpoda sp. strain HFCC864 small subunit ribosomal RNA gene, partial sequence blastn 26054 481 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
7775963 7775963 PRJEB56027_P_NODE_56607_length_385_cov_4.108974_g53798_i0 PRJEB56027 56607 385 4.108974 15.8195499 Colpoda sp. 41631 SAR_Eukaryotes SAR_Eukaryotes 671 0   NTclustered gi|2651357791|gb|PP174306.1| 41631 g53798 i0 98.182 91.9844155844156 385 6 100 1 1 385 3259 3642 Colpoda sp. isolate JGP15 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 35414 671 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
15019803 15019803 PRJEB56027_P_NODE_138632_length_205_cov_4.560606_g135823_i0 PRJEB56027 138632 205 4.560606 9.3492423 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 379 7.229999999999999e-101   NTclustered gi|1802599794|gb|MT001203.1| 41631 g135823 i0 100 100.224390243902 205 0 100 0 1 205 1551 1347 Colpoda sp. strain HFCC848 small subunit ribosomal RNA gene, partial sequence blastn 20546 379 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
16294645 16294645 PRJEB56027_P_NODE_138613_length_205_cov_9.477273_g135804_i0 PRJEB56027 138613 205 9.477273 19.42840965 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 379 7.229999999999999e-101   NTclustered gi|2651357791|gb|PP174306.1| 41631 g135804 i0 100 89.0634146341463 205 0 100 0 1 205 2292 2088 Colpoda sp. isolate JGP15 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 18258 379 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;