RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB56027", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJEB56027 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28296788 28296788 PRJEB56027_P_NODE_88926_length_284_cov_1.459716_g86117_i0 PRJEB56027 88926 284 1.459716 4.14559344 Opitutaceae bacterium 2006848 Bacteria Bacteria 71.6 1.03e-13   NR HVS53637.1 2006848 g86117 i0 66.7 0.570422535211268 54 18 57 0 265 104 59 112 HVS53637.1 hypothetical protein [Opitutaceae bacterium] diamond 162 71.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
29401999 29401999 PRJEB56027_P_NODE_129109_length_243_cov_0.905882_g126300_i0 PRJEB56027 129109 243 0.905882 2.20129326 Chthoniobacteraceae bacterium 2811408 Bacteria Bacteria 108 2.58e-25   NR HEX8296047.1 2811408 g126300 i0 65 0.987654320987654 80 28 98.8 0 241 2 1658 1737 HEX8296047.1 Ig-like domain-containing protein [Chthoniobacteraceae bacterium] diamond 240 108 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae   Chthoniobacteraceae bacterium
30413027 30413027 PRJEB56027_P_NODE_129453_length_243_cov_0.905882_g126644_i0 PRJEB56027 129453 243 0.905882 2.20129326 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 151 4.22e-42   NR PYL57120.1 2026799 g126644 i0 90 1.97530864197531 80 8 98.8 0 241 2 113 192 PYL57120.1 MAG: hypothetical protein DMF31_11285 [Verrucomicrobiota bacterium] diamond 480 151 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31898490 31898490 PRJEB56027_P_NODE_133757_length_241_cov_0.916667_g130948_i0 PRJEB56027 133757 241 0.916667 2.20916747 Opitutaceae bacterium 2006848 Bacteria Bacteria 82.4 3.08e-16   NR MFT3830094.1 2006848 g130948 i0 65.7 0.871369294605809 70 24 87.1 0 28 237 295 364 MFT3830094.1 helix-turn-helix domain-containing protein [Opitutaceae bacterium] diamond 210 82.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;