RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB56027", tax_clade = "Opisthokonta" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJEB56027 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27033539 27033539 PRJEB56027_P_NODE_123422_length_246_cov_0.890173_g120613_i0 PRJEB56027 123422 246 0.890173 2.18982558 Batrachochytrium salamandrivorans 1357716 Fungi Fungi 92.4 8.53e-20   NR KAH9259592.1 1357716 g120613 i0 55 0.975609756097561 80 36 97.6 0 5 244 273 352 KAH9259592.1 protein disulfide-isomerase domain [Batrachochytrium salamandrivorans] diamond 240 92.4 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium salamandrivorans
27381414 27381414 PRJEB56027_P_NODE_93963_length_277_cov_1.421569_g91154_i0 PRJEB56027 93963 277 1.421569 3.93774613 Batrachochytrium salamandrivorans 1357716 Fungi Fungi 113 3.09e-30   NR KAH9255401.1 1357716 g91154 i0 70.7 0.996389891696751 92 25 99.6 1 277 2 13 102 KAH9255401.1 hypothetical protein BASA81_006520 [Batrachochytrium salamandrivorans] diamond 276 113 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium salamandrivorans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;