RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB56027" and tax_clade = "Amoebozoa"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJEB56027 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1398941 1398941 PRJEB56027_P_NODE_96602_length_273_cov_1.835000_g93793_i0 PRJEB56027 96602 273 1.835 5.00955 Ripella sp. GP2 1217115 Discosea other_Eukaryota 477 3.489999999999999e-130   NTclustered gi|399764204|gb|JQ271715.1| 1217115 g93793 i0 98.168 99.5054945054945 273 5 100 0 1 273 14 286 Ripella sp. GP2 18S ribosomal RNA gene, partial sequence blastn 27165 477 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. GP2
29812330 29812330 PRJEB56027_P_NODE_85071_length_290_cov_1.419355_g82262_i0 PRJEB56027 85071 290 1.419355 4.1161295 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 95.5 1.8899999999999998e-20   NR PRP82583.1 1890364 g82262 i0 54.3 0.724137931034483 70 32 72.4 0 74 283 25 94 PRP82583.1 hypothetical protein PROFUN_04888 [Planoprotostelium fungivorum] diamond 210 95.5 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;