RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB55250", tax_phylum = "Thermodesulfobacteriota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB55250 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28605903 28605903 PRJEB55250_P_NODE_10287_length_259_cov_1.655914_g10163_i0 PRJEB55250 10287 259 1.655914 4.28881726 Pseudomonadati 3379134 Bacteria Bacteria 112 1.24e-27   NR MBG3875935.1 32016 g10163 i0 72.9 3.97297297297297 70 19 81.1 0 218 9 1 70 MBG3875935.1 DNA cytosine methyltransferase [Nitratidesulfovibrio oxamicus] diamond 1029 112 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Nitratidesulfovibrio Nitratidesulfovibrio oxamicus
29149824 29149824 PRJEB55250_P_NODE_3329_length_367_cov_2.095238_g3205_i0 PRJEB55250 3329 367 2.095238 7.68952346 Smithella sp. 2053614 Bacteria Bacteria 157 8.98e-42   NR MDD5523681.1 2053614 g3205 i0 65.3 1.91280653950954 118 41 96.5 0 12 365 288 405 MDD5523681.1 LAGLIDADG family homing endonuclease [Smithella sp.] diamond 702 157 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Smithellaceae Smithella Smithella sp.
31866669 31866669 PRJEB55250_P_NODE_1877_length_471_cov_2.442211_g1754_i0 PRJEB55250 1877 471 2.442211 11.50281381 Desulfobacteraceae bacterium 2049433 Bacteria Bacteria 102 6.289999999999999e-24   NR MCF8026628.1 2049433 g1754 i0 48.1 0.67515923566879 106 46 67.5 2 464 147 62 158 MCF8026628.1 hypothetical protein [Desulfobacteraceae bacterium] diamond 318 102 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae   Desulfobacteraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;