RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB55250" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB55250 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9920122 9920122 PRJEB55250_P_NODE_6888_length_285_cov_1.433962_g6764_i0 PRJEB55250 6888 285 1.433962 4.0867917 Trichinella 6333 Nematoda Nematoda 102 7.39e-23   NR KRZ62808.1 6335 g6764 i0 54.1 8 85 39 89.5 0 1 255 438 522 KRZ62808.1 Regulator of chromosome condensation, partial [Trichinella nativa] diamond 2280 102 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella nativa
19247418 19247418 PRJEB55250_P_NODE_5756_length_299_cov_1.362832_g5632_i0 PRJEB55250 5756 299 1.362832 4.07486768 Rhabditidae 6243 Nematoda Nematoda 152 3.15e-44   NR ACI49216.1 860376 g5632 i0 69.7 6.95317725752508 99 30 99.3 0 297 1 113 211 ACI49216.1 hypothetical protein Csp3_JD05.001 [Caenorhabditis angaria] diamond 2079 152 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis angaria
29521518 29521518 PRJEB55250_P_NODE_1890_length_469_cov_5.848485_g1767_i0 PRJEB55250 1890 469 5.848485 27.42939465 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 116 2.66e-30   NR CAJ0575662.1 96644 g1767 i0 46.8 2.41791044776119 126 62 77.4 2 438 76 1 126 CAJ0575662.1 unnamed protein product, partial [Mesorhabditis spiculigera] diamond 1134 116 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis spiculigera

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;