RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

23 rows where bioproject = "PRJEB55250" and tax_phylum = "Basidiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Basidiomycota · 23 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB55250 · 23 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1396299 1396299 PRJEB55250_P_NODE_7662_length_279_cov_1.271845_g7538_i0 PRJEB55250 7662 279 1.271845 3.54844755 Ustilago bromivora 307758 Fungi Fungi 244 3.95e-60   NTclustered gi|1098870294|emb|LT558140.1| 307758 g7538 i0 95.455 14.7347670250896 154 6 55 1 126 279 104682 104530 Ustilago bromivora strain UB2112 genome assembly, organelle: mitochondrion blastn 4111 244 1 Eukaryota Opisthokonta Fungi Basidiomycota Ustilaginomycetes Ustilaginales Ustilaginaceae Ustilago Ustilago bromivora
4819832 4819832 PRJEB55250_P_NODE_4484_length_328_cov_3.321569_g4360_i0 PRJEB55250 4484 328 3.321569 10.89474632 Udeniomyces 42658 Fungi Fungi 601 2.4399999999999998e-167   NTclustered gi|1102646410|gb|KY109980.1| 42659 g4360 i0 99.695 99.9329268292683 328 1 100 0 1 328 798 471 Udeniomyces megalosporus culture CBS:7359 large subunit ribosomal RNA gene, partial sequence blastn 32778 601 1 Eukaryota Opisthokonta Fungi Basidiomycota Tremellomycetes Cystofilobasidiales Mrakiaceae Udeniomyces Udeniomyces megalosporus
6500057 6500057 PRJEB55250_P_NODE_4546_length_327_cov_1.141732_g4422_i0 PRJEB55250 4546 327 1.141732 3.73346364 Malassezia globosa 76773 Fungi Fungi 604 1.8799999999999993e-168   NTclustered gi|1321659477|gb|KY911087.1| 76773 g4422 i0 100 44.0642201834862 327 0 100 0 1 327 30383 30057 Malassezia globosa mitochondrion, complete genome blastn 14409 604 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia globosa
7774256 7774256 PRJEB55250_P_NODE_4307_length_333_cov_7.092308_g4183_i0 PRJEB55250 4307 333 7.092308 23.61738564 Malassezia restricta 76775 Fungi Fungi 448 3.4299999999999995e-121   NTclustered gi|1546635598|ref|XR_003525370.1| 76775 g4183 i0 91.617 73.4264264264264 334 13 100 11 1 333 3294 2975 Malassezia restricta 28S ribosomal RNA (MRET_r0004), rRNA blastn 24451 448 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia restricta
12875437 12875437 PRJEB55250_P_NODE_6611_length_287_cov_1.439252_g6487_i0 PRJEB55250 6611 287 1.439252 4.13065324 Malassezia restricta 76775 Fungi Fungi 525 1.2999999999999995e-144   NTclustered gi|1546635218|ref|XM_027629268.1| 76775 g6487 i0 99.652 1 287 1 100 0 1 287 744 1030 Malassezia restricta uncharacterized protein (MRET_2641), partial mRNA blastn 287 525 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia restricta
14149961 14149961 PRJEB55250_P_NODE_10412_length_258_cov_1.664865_g10288_i0 PRJEB55250 10412 258 1.664865 4.2953517 Malassezia globosa 76773 Fungi Fungi 438 1.5399999999999995e-118   NTclustered gi|164661268|ref|XM_001731705.1| 425265 g10288 i0 97.287 1 258 7 100 0 1 258 1502 1245 Malassezia globosa CBS 7966 uncharacterized protein (MGL_1025), partial mRNA blastn 258 438 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia globosa
14150229 14150229 PRJEB55250_P_NODE_6752_length_286_cov_1.446009_g6628_i0 PRJEB55250 6752 286 1.446009 4.13558574 Malassezia restricta 76775 Fungi Fungi 529 1e-145   NTclustered gi|1546634998|ref|XM_027629158.1| 76775 g6628 i0 100 1 286 0 100 0 1 286 1308 1593 Malassezia restricta oxidoreductase (MRET_2531), partial mRNA blastn 286 529 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia restricta
16698310 16698310 PRJEB55250_P_NODE_11094_length_253_cov_1.711111_g10970_i0 PRJEB55250 11094 253 1.711111 4.32911083 Polyporus melanopus 40486 Fungi Fungi 401 1.9799999999999994e-107   NTclustered gi|1859735583|gb|MT644901.1| 40486 g10970 i0 95.257 103.343873517787 253 12 100 0 1 253 1860 2112 Polyporus melanopus isolate DM1069 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 26146 401 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Polyporales Polyporaceae Polyporus Polyporus melanopus
17569714 17569714 PRJEB55250_P_NODE_2654_length_405_cov_4.030120_g2531_i0 PRJEB55250 2654 405 4.03012 16.321986 Malassezia 55193 Fungi Fungi 743 0   NTclustered gi|953821272|gb|KT310070.1| 76773 g2531 i0 99.753 86.9308641975309 405 1 100 0 1 405 333 737 Malassezia globosa isolate 1242 large subunit ribosomal RNA gene, partial sequence blastn 35207 743 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia globosa
19247286 19247286 PRJEB55250_P_NODE_14156_length_246_cov_0.890173_g14032_i0 PRJEB55250 14156 246 0.890173 2.18982558 Malassezia restricta 76775 Fungi Fungi 455 1.4500000000000002e-123   NTclustered gi|1546636883|ref|XM_027630084.1| 76775 g14032 i0 100 1 246 0 100 0 1 246 1215 970 Malassezia restricta serine/threonine-protein phosphatase 5 (MRET_3457), partial mRNA blastn 246 455 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia restricta
20522848 20522848 PRJEB55250_P_NODE_9257_length_267_cov_1.293814_g9133_i0 PRJEB55250 9257 267 1.293814 3.45448338 Malassezia restricta 76775 Fungi Fungi 483 7.31e-132   NTclustered gi|1546635392|ref|XM_027629355.1| 76775 g9133 i0 99.251 1 267 2 100 0 1 267 459 193 Malassezia restricta DNA-(apurinic or apyrimidinic site) lyase (MRET_2728), partial mRNA blastn 267 483 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia restricta
22668736 22668736 PRJEB55250_P_NODE_14798_length_244_cov_1.801170_g14674_i0 PRJEB55250 14798 244 1.80117 4.3948548 Malassezia 55193 Fungi Fungi 451 1.86e-122   NTclustered gi|398360769|gb|JX132826.1| 338567 g14674 i0 100 100.954918032787 244 0 100 0 1 244 269 26 Uncultured Malassezia clone CEas161 26S ribosomal RNA gene, partial sequence blastn 24633 451 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae   uncultured Malassezia
23073817 23073817 PRJEB55250_P_NODE_16999_length_233_cov_2.406250_g16875_i0 PRJEB55250 16999 233 2.40625 5.6065625 root 1 Root_unresolved Root_unresolved 112 3.41e-29   NR XP_062791719.1 564305 g16875 i0 74.6 9.07725321888412 71 18 91.4 0 233 21 104 174 XP_062791719.1 peptidyl-prolyl cis-trans isomerase [Kwoniella shivajii] diamond 2115 113 0.991150442477876 Eukaryota Opisthokonta Fungi Basidiomycota Tremellomycetes Tremellales Cryptococcaceae Kwoniella Kwoniella shivajii
26812095 26812095 PRJEB55250_P_NODE_12981_length_248_cov_0.880000_g12857_i0 PRJEB55250 12981 248 0.88 2.1824 Kwoniella newhampshirensis 1651941 Fungi Fungi 159 8.88e-44   NR XP_066805429.1 1651941 g12857 i0 93.3 5.41935483870968 75 5 90.7 0 248 24 477 551 XP_066805429.1 hypothetical protein IAR55_001099 [Kwoniella newhampshirensis] diamond 1344 159 1 Eukaryota Opisthokonta Fungi Basidiomycota Tremellomycetes Tremellales Cryptococcaceae Kwoniella Kwoniella newhampshirensis
26963343 26963343 PRJEB55250_P_NODE_9602_length_264_cov_1.612565_g9478_i0 PRJEB55250 9602 264 1.612565 4.2571716 Tremellales 5234 Fungi Fungi 144 1.28e-37   NR RXK37468.1 5217 g9478 i0 76.1 17 88 21 100 0 264 1 184 271 RXK37468.1 hypothetical protein M231_05291 [Tremella mesenterica] diamond 4488 144 1 Eukaryota Opisthokonta Fungi Basidiomycota Tremellomycetes Tremellales Tremellaceae Tremella Tremella mesenterica
27563685 27563685 PRJEB55250_P_NODE_3144_length_376_cov_1.508251_g3020_i0 PRJEB55250 3144 376 1.508251 5.67102376 Fungi 4751 Fungi Fungi 111 4.73e-26   NR PPQ69557.1 231916 g3020 i0 53 17.4015957446809 115 54 91.8 0 1 345 119 233 PPQ69557.1 hypothetical protein CVT26_001559 [Gymnopilus dilepis] diamond 6543 111 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Agaricales Hymenogastraceae Gymnopilus Gymnopilus dilepis
28353263 28353263 PRJEB55250_P_NODE_12866_length_248_cov_1.760000_g12742_i0 PRJEB55250 12866 248 1.76 4.3648 Tremellales 5234 Fungi Fungi 106 2.56e-26   NR KAK1923741.1 5418 g12742 i0 83.1 4.23387096774194 59 8 71.4 1 70 246 1 57 KAK1923741.1 hypothetical protein DB88DRAFT_492272 [Papiliotrema laurentii] diamond 1050 106 1 Eukaryota Opisthokonta Fungi Basidiomycota Tremellomycetes Tremellales Rhynchogastremaceae Papiliotrema Papiliotrema laurentii
29654220 29654220 PRJEB55250_P_NODE_7810_length_278_cov_1.068293_g7686_i0 PRJEB55250 7810 278 1.068293 2.96985454 Mycena venus 2733690 Fungi Fungi 63.2 3.43e-9   NR KAF7350438.1 2733690 g7686 i0 43.8 1.69424460431655 64 35 68 1 2 190 277 340 KAF7350438.1 Cytochrome P450 [Mycena venus] diamond 471 63.2 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Agaricales Mycenaceae Mycena Mycena venus
30374823 30374823 PRJEB55250_P_NODE_15812_length_242_cov_1.822485_g15688_i0 PRJEB55250 15812 242 1.822485 4.4104137 Agaricomycetes 155619 Fungi Fungi 103 4.3999999999999995e-25   NR XP_012183197.1 599839 g15688 i0 92.6 6.79338842975207 54 4 66.9 0 1 162 191 244 XP_012183197.1 uncharacterized protein FIBRA_06065 [Fibroporia radiculosa] diamond 1644 103 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Polyporales Fibroporiaceae Fibroporia Fibroporia radiculosa
31392571 31392571 PRJEB55250_P_NODE_12016_length_250_cov_0.870056_g11892_i0 PRJEB55250 12016 250 0.870056 2.17514 Kwoniella shivajii 564305 Fungi Fungi 118 1.22e-28   NR XP_062788833.1 564305 g11892 i0 78.5 2.34 65 14 78 0 198 4 778 842 XP_062788833.1 uncharacterized protein IL334_001022 [Kwoniella shivajii] diamond 585 118 1 Eukaryota Opisthokonta Fungi Basidiomycota Tremellomycetes Tremellales Cryptococcaceae Kwoniella Kwoniella shivajii
31455733 31455733 PRJEB55250_P_NODE_2576_length_410_cov_1.827893_g2453_i0 PRJEB55250 2576 410 1.827893 7.4943613 Rhodotorula graminis WP1 578459 Fungi Fungi 120 3.4799999999999993e-31   NR XP_018272859.1 578459 g2453 i0 54.8 3.82682926829268 104 47 76.1 0 321 10 64 167 XP_018272859.1 uncharacterized protein RHOBADRAFT_12232 [Rhodotorula graminis WP1] diamond 1569 120 1 Eukaryota Opisthokonta Fungi Basidiomycota Microbotryomycetes Sporidiobolales Sporidiobolaceae Rhodotorula Rhodotorula graminis
32056644 32056644 PRJEB55250_P_NODE_14378_length_245_cov_1.447674_g14254_i0 PRJEB55250 14378 245 1.447674 3.5468013 Suillus ampliporus 1912932 Fungi Fungi 43.9 0.0144   NR KAG0699371.1 1912932 g14254 i0 36.1 0.881632653061225 72 42 84.5 3 30 236 172 242 KAG0699371.1 acid protease [Suillus ampliporus] diamond 216 43.9 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Boletales Suillaceae Suillus Suillus ampliporus
32120091 32120091 PRJEB55250_P_NODE_12578_length_249_cov_0.875000_g12454_i0 PRJEB55250 12578 249 0.875 2.17875 Malassezia nana 180528 Fungi Fungi 130 2.8999999999999993e-33   NR WFD25918.1 180528 g12454 i0 70.7 3.95180722891566 82 24 98.8 0 2 247 118 199 WFD25918.1 hypothetical protein MNAN1_000888 [Malassezia nana] diamond 984 130 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia nana

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;