RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJEB55250" and tax_kingdom = "Thermotogati"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 6 ✖

bioproject 1

  • PRJEB55250 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2671810 2671810 PRJEB55250_P_NODE_15483_length_243_cov_0.905882_g15359_i0 PRJEB55250 15483 243 0.905882 2.20129326 Deinococcus sp. VB343 3385567 Bacteria Bacteria 265 2.58e-66   NTclustered gi|2905214251|gb|CP179946.1| 3385567 g15359 i0 90.863 0.810699588477366 197 18 81 0 47 243 158979 158783 Deinococcus sp. VB343 chromosome 2, complete sequence blastn 197 265 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. VB343
3542404 3542404 PRJEB55250_P_NODE_16883_length_236_cov_2.472393_g16759_i0 PRJEB55250 16883 236 2.472393 5.83484748 Deinococcus 1298 Bacteria Bacteria 414 2.34e-111   NTclustered gi|1751871007|dbj|AP021849.1| 57498 g16759 i0 98.305 389.919491525424 236 4 100 0 1 236 74125 73890 Deinococcus grandis ATCC 43672 DNA, complete genome blastn 92021 414 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus grandis
17569662 17569662 PRJEB55250_P_NODE_12874_length_248_cov_1.760000_g12750_i0 PRJEB55250 12874 248 1.76 4.3648 Deinococcus cavernae 2320857 Bacteria Bacteria 62.8 3.47e-9   NR WP_119765863.1 2320857 g12750 i0 96.9 0.774193548387097 32 1 38.7 0 151 246 1 32 WP_119765863.1 ATP-dependent helicase HrpB [Deinococcus cavernae] diamond 192 62.8 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus cavernae
27216227 27216227 PRJEB55250_P_NODE_16702_length_241_cov_0.916667_g16578_i0 PRJEB55250 16702 241 0.916667 2.20916747 Deinococcus 1298 Bacteria Bacteria 94.4 9.92e-21   NR WP_239048322.1 2917691 g16578 i0 53.2 1.85477178423237 79 37 98.3 0 241 5 149 227 WP_239048322.1 hypothetical protein [Deinococcus sp. KNUC1210] diamond 447 94.4 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. KNUC1210
27349894 27349894 PRJEB55250_P_NODE_15583_length_243_cov_0.905882_g15459_i0 PRJEB55250 15583 243 0.905882 2.20129326 Deinococcus sp. LM3 1938608 Bacteria Bacteria 156 5.21e-46   NR WP_078304232.1 1938608 g15459 i0 97.5 0.987654320987654 80 2 98.8 0 2 241 103 182 WP_078304232.1 phosphatase PAP2 family protein [Deinococcus sp. LM3] diamond 240 156 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. LM3
27854831 27854831 PRJEB55250_P_NODE_10045_length_261_cov_1.505319_g9921_i0 PRJEB55250 10045 261 1.505319 3.92888259 Deinococcus petrolearius 1751295 Bacteria Bacteria 137 1.14e-36   NR WP_380050562.1 1751295 g9921 i0 80.5 1 87 17 100 0 261 1 200 286 WP_380050562.1 exonuclease domain-containing protein [Deinococcus petrolearius] diamond 261 137 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus petrolearius

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;