RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJEB55250" and tax_kingdom = "Methanobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_kingdom 1

  • Methanobacteriati · 4 ✖

tax_clade 1

bioproject 1

  • PRJEB55250 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21393892 21393892 PRJEB55250_P_NODE_10577_length_257_cov_1.619565_g10453_i0 PRJEB55250 10577 257 1.619565 4.16228205 root 1 Root_unresolved Root_unresolved 97.1 2.32e-23   NR WP_188680572.1 399579 g10453 i0 55.4 8.67315175097276 83 34 96.9 1 250 2 2 81 WP_188680572.1 peroxiredoxin [Thermogymnomonas acidicola] diamond 2229 97.1 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Thermoplasmatales   Thermogymnomonas Thermogymnomonas acidicola
23073773 23073773 PRJEB55250_P_NODE_15439_length_243_cov_0.905882_g15315_i0 PRJEB55250 15439 243 0.905882 2.20129326 Halapricum desulfuricans 2841257 Archaea Archaea 52.8 0.022   NTclustered gi|1995635729|gb|CP064789.1| 2841257 g15315 i0 96.774 0.358024691358025 31 1 13 0 56 86 451169 451139 Halapricum desulfuricans strain HSR-Bgl chromosome, complete genome blastn 87 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halapricum Halapricum desulfuricans
27570664 27570664 PRJEB55250_P_NODE_16664_length_241_cov_0.916667_g16540_i0 PRJEB55250 16664 241 0.916667 2.20916747 Candidatus Methanoperedens sp. 2032688 Archaea Archaea 71.6 1.39e-12   NR MCX9025066.1 2032688 g16540 i0 67.4 0.572614107883817 46 15 57.3 0 140 3 8 53 MCX9025066.1 hypothetical protein [Candidatus Methanoperedens sp.] diamond 138 71.6 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Candidatus Methanoperedentaceae Candidatus Methanoperedens Candidatus Methanoperedens sp.
29584387 29584387 PRJEB55250_P_NODE_6530_length_288_cov_1.293023_g6406_i0 PRJEB55250 6530 288 1.293023 3.72390624 root 1 Root_unresolved Root_unresolved 76.3 5.81e-14   NR MBR19370.1 2026739 g6406 i0 76.2 0.875 42 10 43.8 0 1 126 278 319 MBR19370.1 ribonucleotide-diphosphate reductase subunit beta [Methanobacteriota archaeon] diamond 252 76.3 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;