RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB55250" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 2 ✖

bioproject 1

  • PRJEB55250 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6094987 6094987 PRJEB55250_P_NODE_15565_length_243_cov_0.905882_g15441_i0 PRJEB55250 15565 243 0.905882 2.20129326 Fusobacterium 848 Bacteria Bacteria 444 3.09e-120   NTclustered gi|1721134154|emb|LR698955.1| 851 g15441 i0 99.588 64.0288065843621 243 1 100 0 1 243 1872018 1871776 Fusobacterium nucleatum isolate MGYG-HGUT-01347 genome assembly, chromosome: 1 blastn 15559 444 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
9048991 9048991 PRJEB55250_P_NODE_15948_length_242_cov_0.911243_g15824_i0 PRJEB55250 15948 242 0.911243 2.20520806 Leptotrichia wadei 157687 Bacteria Bacteria 448 2.3799999999999995e-121   NTclustered gi|1708575239|dbj|AP019834.1| 157687 g15824 i0 100 490.847107438017 242 0 100 0 1 242 1695133 1694892 Leptotrichia wadei JMUB3933 DNA, complete genome blastn 118785 448 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;