RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB55250", tax_clade = "Sar" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB55250 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7369375 7369375 PRJEB55250_P_NODE_3486_length_360_cov_2.463415_g3362_i0 PRJEB55250 3486 360 2.463415 8.868294 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 146 1.1999999999999999e-41   NR XP_001014308.1 312017 g3362 i0 58.3 1.91666666666667 115 48 95.8 0 349 5 52 166 XP_001014308.1 eukaryotic translation initiation factor 5A [Tetrahymena thermophila SB210] diamond 690 147 0.993197278911565 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
7774074 7774074 PRJEB55250_P_NODE_11047_length_253_cov_3.255556_g10923_i0 PRJEB55250 11047 253 3.255556 8.23655668 Sterkiella histriomuscorum 94289 SAR_Eukaryotes SAR_Eukaryotes 137 1.37e-38   NR AAZ23859.1 94289 g10923 i0 79.5 15.7114624505929 78 16 92.5 0 237 4 1 78 AAZ23859.1 ribosomal protein L10 [Sterkiella histriomuscorum] diamond 3975 137 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Sterkiella Sterkiella histriomuscorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;