RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB55250", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJEB55250 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7774110 7774110 PRJEB55250_P_NODE_1267_length_573_cov_1.436000_g1147_i0 PRJEB55250 1267 573 1.436 8.22828 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 89.8 4.31e-13   NTclustered gi|2874253974|emb|OY970299.1| 412056 g1147 i0 87.179 0.654450261780105 78 10 14 0 466 543 2208510 2208587 MAG: uncultured Verrucomicrobiae bacterium isolate MFD09603.bin.1.43 genome assembly, chromosome: 1 blastn 375 89.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
27942942 27942942 PRJEB55250_P_NODE_7785_length_278_cov_1.341463_g7661_i0 PRJEB55250 7785 278 1.341463 3.72926714 Chthoniobacter 295577 Bacteria Bacteria 136 2.8799999999999997e-35   NR MBV9656665.1 2026799 g7661 i0 78.4 6.85251798561151 88 18 93.9 1 18 278 152 239 MBV9656665.1 type II/IV secretion system protein [Verrucomicrobiota bacterium] diamond 1905 136 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30223086 30223086 PRJEB55250_P_NODE_8832_length_270_cov_1.482234_g8708_i0 PRJEB55250 8832 270 1.482234 4.0020318 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 94.4 6.58e-21   NR MDB6032865.1 2026801 g8708 i0 49.4 0.966666666666667 87 44 96.7 0 3 263 121 207 MDB6032865.1 short-chain dehydrogenase [Verrucomicrobiales bacterium] diamond 261 94.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
31898474 31898474 PRJEB55250_P_NODE_10077_length_261_cov_1.228723_g9953_i0 PRJEB55250 10077 261 1.228723 3.20696703 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 55.5 1.49e-6   NR MEO0055633.1 2026799 g9953 i0 39 0.885057471264368 77 44 85.1 2 23 244 374 450 MEO0055633.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 231 55.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;